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研究生:林建平
研究生(外文):Jian-Ping Lin
論文名稱:偽發現率之評註
論文名稱(外文):A Note on False Discovery Rate
指導教授:曹振海
指導教授(外文):Chen-Hai Tsao
學位類別:碩士
校院名稱:國立東華大學
系所名稱:應用數學系
學門:數學及統計學門
學類:數學學類
論文種類:學術論文
論文出版年:2009
畢業學年度:97
語文別:英文
論文頁數:80
中文關鍵詞:兩群模型、局部偽發現率、偽發現率、偏斜常態分布、邊緣化
外文關鍵詞:marginalization、two-group model、skew normal distribution、False discovery rate、local false discovery rate
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  • 被引用被引用:0
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  • 下載下載:26
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最近的應用,特別是在基因組學和影像學,要求在同時測試大量的
假設檢定問題。偽發現率(FDR)已被建議,並承認作為一個強有力的標準在此種情況之下。偽發現率的逼近,如局部偽發現率(lfdr)已被提出和合理利用於兩群模型(two-groups model)之下,例如Efron (2007a)。在此論文中,我們利用邊緣化(marginalization)的方法推廣兩群模型,並且在其架構下,探討偽發現率及局部偽發現率的合理性。當中亦關聯偏斜常態分布(skew-normal)。
Recent applications, particularly in genomics and imaging, call for testing large number
of hypothesis tests at the same time. The False Discovery Rate (FDR) has been proposed
and recognized as a powerful criterion in these contexts. Approximations of FDR such as
local false discovery rate (lfdr) has been proposed and justified using two-group models,
for example Efron (2007a). A generalization of two-group models is proposed. Under this
framework, we study various approximations of false discovery rate and their validity.
The connection with skew normality is also addressed.
1 Introduction 1
2 FDR and lfdr under hypothesis testing framework 7
2.1 Simple hypothesis testing problems . . . . . . . . . . . . . . . . . . . . . . 7
2.2 Composite hypothesis testing problems . . . . . . . . . . . . . . . . . . . . 16
3 Estimating FDR and lfdr 29
3.1 Two-groups model-based estimation . . . . . . . . . . . . . . . . . . . . . . 29
3.2 Marginalization-based estimation . . . . . . . . . . . . . . . . . . . . . . . 47
4 Conclusion and Discussion 65
Appendix 69
1.1 Simple hypothesis testing problems simulation . . . . . . . . . . . . . . . . 69
1.2 One-sided hypothesis testing problems simulation . . . . . . . . . . . . . . 71
1.3 Two-sided hypothesis testing problems simulation (based on the two-groups
model) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 74
1.4 Two-sided hypothesis testing problems simulation (based on marginalization) 76
Azzalini, A. (2004). The skew-normal distribution and related multivariate families. Scandinavian Journal of Statistics 32 159-188.
Benjamini, Y. and Hochberg, Y. (1995). Controlling the false discovery rate: a prac-tical and powerful approach to multiple testing. Journal of the Royal Statistical Society Ser. B 57 289-300.
Berger, J. O. (1980). Statistical Decision Theory and Bayesian Analysis (2nd ed). Springer-Verlag, New York.
Cai, T. T. (2007). Estimating the null and the proprotion of nonnull effects in large-scale multiple comparisons. Journal of the American Statistical Association 102 495-506.
Cai, T. T. (2008). Comment: microarrays, empirical bayes and the two-group model. Statistical Science 23 29-33.
Efron, B. (2004). Large-scale simultaneous hypothesis testing: the choice of a null hypothesis. Journal of the American Statistical Association 99 96-104.
Efron, B. (2006). Correlation and large-scale simultaneous significance testing. http://www-stat.stanford.edu/∼brad/papers/Correlation-2006.pdf
Efron, B. (2007a). Doing thousands of hypothesis tests at the same time. Metron LXU 3-21.
Efron, B. (2007b). Size, power, and false discovery rates. Annals of Statistics 35. 1351-1377.
Hill, M. A. and Dixon, W. J. (1982). Robustness in real life: A study of clinical laboratory data. Biometrics 38 377-396.
Lehmann, E. L. (1994). Testing Statistical Hypotheses (2nd ed). Wiley, New York.
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