跳到主要內容

臺灣博碩士論文加值系統

(216.73.216.230) 您好!臺灣時間:2026/10/25 11:54
字體大小: 字級放大   字級縮小   預設字形  
回查詢結果 :::

詳目顯示

: 
twitterline
研究生:林建利
研究生(外文):Chien-li Lin
論文名稱:以粒線體DNA控制區之序列探討水雉之遺傳變異
論文名稱(外文):Genetic Variation of Pheasant-tailed Jacana (Hydrophasianus chirurgus), Based on Control Region Sequences of Motochondrial DNA
指導教授:張學文張學文引用關係
指導教授(外文):Chang, Hsueh-Wen
學位類別:碩士
校院名稱:國立中山大學
系所名稱:生物科學系研究所
學門:生命科學學門
學類:生物學類
論文種類:學術論文
論文出版年:2005
畢業學年度:93
語文別:英文
論文頁數:40
中文關鍵詞:涉禽、水鳥、廣東肇慶、官田、遺傳分化、東南亞、種內、分子演化
外文關鍵詞:intraspecies、gene flow、genetic divergence、D-loop、shordbird、molecular evolution
相關次數:
  • 被引用被引用:3
  • 點閱點閱:309
  • 評分評分:
  • 下載下載:45
  • 收藏至我的研究室書目清單書目收藏:0
近年來,雉尾水雉在台灣的數量不斷下降,而且棲地也因人為活動而逐漸減少。其基因多樣性已成為一個在保育上的重要議題。本研究中以粒線體控制區作為基因標誌,以探索雉尾水雉在台灣、廣東、泰國三地之間的遺傳變異。總共從34隻個體中得到長度1182鹼基對之序列,只發現6個變異點以及7種不同的基因型,而且在這些基因型中彼此都很相似。在取樣的三個地區之間,其基因變異相當貧乏,而且存在有高度的基因交流。不過,這些結論尚有待更多的樣本數來加以驗證。
The number of Pheasant-tailed Jacana (Hydrophasianus chirurgus) in Taiwan has been reduced and habitats decreased because of human activities in many years. From a conservation perspective, the genetic diversity of this bird became an important subject. The control region in mitochondrial DNA was used as a gene marker to investigate the genetic variation amoung populations of Hydrophasianus chirurgus from Taiwan, Goungdong, and Thailand. An 1182-bp nucleotide sequence was amplified from 34 individuals. Six variable sites and seven haplotypes were found in the control region, and the observed haplotypes were similar in all samples. Low genetic divergence and high degree of gene flow were estimated among three populations. However, this conclusion need more samples of individuals to be proved.
Introduction……………………………………………………………...1
Methods and Materials…………………………………………………4
Results…………………………………………………………………..9
Discussion……………………………………………………………..13
Reference…………………………………………………………...…17

Figures
1. The records of Hydrophasianus chirurgus from 1977 to 1997……………...21
2. Sample localities…………………………………………………………………22
3. Entropy plot of the D-loop sequence…………………………………………..23
4. Distribution of the conserved boxes in D-loop………………………………..24
5. Phylogenetic relationships……………………………………………………...25
6. The TCS cladogram……………………………………………………………..26
7. The minimum spanning network……………………………………………….27

Table
1. The samples used in this study………………………………………………..28
2. The morphological measurements in different sex…………………………..29
3. The morphological measurements in the same sex…………………………30
4. The base composition and variance in D-loop……………………………….31
5. The variable sites in D-loop…………………………………………………….32
6. The pariwise distance…………………………………………………………..33
7. The result of AMOVA……………………………………………………………34
8. The result about population genetics………………………………………….35
Aquadro, C. F. and B. D. Greenberg. 1983. Human mitochondrial DNA variation and evolution: analysis of nucleotide sequences from seven individuals. Genetics 103: 287-312.
Avise, J. C., J. Arnold, R. M. Ball, E. Bermingham, T. Lamb, J. E. Neigel, C. A. Reeb and N. C. Saunders. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annual Review of Ecology and Sysyematics l8: 489-522.
Betts, B. J. and D. A. Jenni, 1991. Time budget and the adaptiveness of polyandry in northern jacanas. Wilson Bulletin 103:578-597.
Brown, W. M., M. George and A. C. Wilson. 1979. Rapid evolution of animal mitochondrial DNA. Proceeding of the National Academy of Sciences of the United States America 76: 1967-1971.
Brown, G. G., G. Gadaleta, G. Pepe, C. Saccone and E. Sbisa. 1986. Structural conservation and variation in the D-loop-containing region of vertebrate mitochondrial DNA. Journal of Molecular Biology 192: 503-511.
Buehler, D. M. and A. J. Baker. 2003. Genome characterization of the red knot (Calidris canutus) mitochondrial control region. Genome 46: 565-572.
Butchart, S. H. M. 2000. Population structure and breeding system of the sex-role reversed, polyandrous bronze-winged jacana Metopidius indicus. Ibis 142: 93-102.
Chen, J. T. F. and M. C. Yu. 1984. A Synopsis of the Vertebrates of Taiwan. (in Chinese).
Clement M., D. Posada and K. Crandall. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9: 1657-1660.
del Hoyo, J., A. Elliott and J. Sargatal. eds. 1996. Handbook of the Birds of the World. Vol. 3 Lynx Editions, Barcelona. p.276~291.
Desjardins, P. and R. Morais. 1990. Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates. Journal of Molecular Biology 212: 599-634.
Excoffier, L. and P. E. Smouse. 1994. Using allele frequencies and geographic subdivision to reconstruct gene trees with a species: molecular variance parsimony. Genetics 136: 343-359.
Frankham R., J. D. Ballou and D. A. Briscoe. 2002. Introduction to Conservation Genetics. Cambridge University Press, Cambridge.
Freeman, A. R., D. E. MacHugh, S. McKeown, C. Walzer, D. J. McConnell and D. G. Bradley. 2001. Sequence variation in the mitochondrial DNA control region of wild African cheetahs (Acinonyx jubatus) Heredity 86: 355-62.
Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
Hoelzel A. R., J. Halley, S. J. O''Brien, C. Campagna, T. Arnbom, B. Le Boeuf, K. Ralls and G. A. Dover. 1993. Elephant seal genetic variation and the use of simulation models to investigate historical population bottlenecks. Journal of Heredity 84: 443-449.
Humiitirou, A. and T. Sinkiti. 1940. The survey of the natural treasures part 6. Japan-Taiwan Governor''s Office Press Taiwan (in Japanese).
Krajewski, C. and J. W. J. Fetzner. 1994. Phylogeny of cranes (Gruiformes: Gruidae) based on cytochrome-b DNA sequences. The Auk 111: 351–365.
Kumar, S., K. Tamura, I. B. Jakobsen and M. Nei. 2001. MEGA2: Molecular
Evolutionary Genetics Analysis Software, Department of Biology, Arizona, USA.
Lande, R. 1988. Genetics and demography in biological conservation. Science 16: 1455-1460.
Lansman R. A., J. C. Avise and M. D. Huettel. 1983. Critical experimental test of the possibility of paternal leakage of mitochondrial DNA. Proceeding of the National Academy of Sciences of the United States America 80: 1969–1971.
Marshall, H. D. and A. J. Baker. 1997. Structural Conservation and Variation in the Mitochondrial Control Region of Fringilline Finches (Fringilla spp.) and the Greenfinch (Carduelis chloris). Molecular biology and evolution 14: 173-184.
Masuda, R., M. Noro, K. Naoko, C. Nishida-Umehara, H. Takechi, T Yamazaki, M. Kosuge and C. M. Yoshida. 1998. Genetic characteristics of endangered Japanese golden eagles (Aquila chrysaetos japonica) based on mitochondrial DNA D-loop sequences and karyotypes. Zoo Biology 17: 111–121.
Menotti-Raymond, M. and S. J. O''Brien. 1993. Dating the genetic bottleneck of the African cheetah. Proceeding of the National Academy of Sciences of the United States America 90: 3172–3176.
Moritz, C., T. E. Dowling and W. M. Brown. 1987. Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Annual Review of Ecology and Systematics 18: 269-292.
O’Brien, S. J., M. E. Roelke, L. Marker, A. Newman, C. A. Winkler, D. Meltzer, L. Colly, J. F. Evermann, M. Bush and D. E. Wildt. 1985. A genetic basis for species vulnerability in the cheetah. Science 227: 1428–1434.
Omland, K. E., S. M. Lanyon and S. J. Fritz. 1999. A Molecular Phylogeny of the New World Orioles (Icterus): The importance of dense taxon sampling. Molecular Phylogenetics and Evolution 12: 224–239.
Owens, I. P. F., T. Burke and D. B. A. Thompson, 1994. Extraordinary sex-roles in the eurasian dotterel-female mating arenas, female-female competition, and female mate choice. American Naturalist 144: 76-100.
Posada, D. and K. A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
Quinn, T. W. and A. C. Wilson. 1993. Sequence evolution in and around the mitochondrial control region in birds. Journal of Molecular Evolution 37: 417-425.
Roques, S., J. A. Godoy, J. J. Negro and F. Hiraldo. 2004. Organization and variation of the mitochondrial control region in two vulture species, gypaetus barbatus and neophron percnopterus. Journal of Heredity 95: 332-337.
Rozas, J., J. C. Sánchez-DelBarrio, X. Messeguer and R. Rozas. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics. 19: 2496-2497.
Ruokonen, M. and L. Kvist. 2002. Structure and evolution of the avian mitochondrial control region. Molecular Phylogenetics and Evolution 23: 422-432.
Sambrook, J., E. F. Fritsch and T. Maniatis. 1989. Molecular Cloning: a Laboratory Manual. Cold Spring Harbor Laboratory Press, NY, USA.
Schneider, S., D. Roessli and L. Excoffier. 2001. Arlequin: A software for population genetics data analysis. Ver. 2.001. Genetics and Biometry Lab, Dept. of Anthropology, University of Geneva.
Selander, R. K. and D. W. Kaufman. 1973. Genic Variability and Strategies of Adaptation in Animals. Proceeding of the National Academy of Sciences of the United States America 70: 1875-1877.
Slatkin, M. 1987. Gene flow and the geographic structure of natural populations. Science 236: 787-792.
Swofford, D. L. 1998. PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods). version 4.0 beta. Sinauer, Massachusetts, USA.
Tamura, K. and M. Nei. 1993 Estimation of the umber of nucleotide substitution in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10: 512-526.
Tarboton, W. R. 1993. Incubation behavior of the African jacana. South African Journal of Zoology 28: 32-39.
Tarr, C. L. 1995. Primers for amplification and determination of mitochondrial control-region sequences in oscine passerines. Molecular Ecology 4: 527-529.
Tarr, C. L. and R. C. Fleischer. 1999. Population boundaries and genetic diversity in the endangered Mariana crow (Corvus kubaryi). Molecular Ecology 8: 941-949.
Thong-aree, S., O. Khobkhet, V. Lauhachinda and S. Pong-umpai. 1995. Breeding biology of pheasant-tailed Jacana Hydrophasianus chirurgus in central Thailand. Natural History Bulletin Siam Society 43: 289-302.
Wenink, P. W., A. J. Baker and M. G. L. Tilanus, 1993. Hypervariable-control-region sequences reveal global population structuring in a long-distance migrant shorebird, the Dunlin (Calidris alpina). National Academy of Sciences of the United States America 90: 94–98.
Wennerberg, L., M. Klaassen and Å. Lindström. 2002. Geographical variation and population Sandpiper Calidris fuscicollisas DNA and carbon isotope ratios. Oecologia 131: 380–390.
Whittingham, L. A., F. H. Sheldon and S. T. Emlen. 2002. Molecular phylogeny of jacanas and its implications for morphologic and biogeographic evolution. The Auk 117: 22-32.
Wilson, A. C., R. L. Cann, S. M. Carr, M. George, U. B. Gyllensten, K. M. Helmbychowski, R. G. Higuchi, S. R. Palumbi, E. M. Prager, R. D. Sage and M. Stoneking. 1985. Mitochondrial DNA and two perspectives on evolutionary genetics. Biological Journal of the Linnean Society 26: 375-400.
Wright, S. 1951. The genetical structure of population. Annual Eugenetics 15: 323-354.
QRCODE
 
 
 
 
 
                                                                                                                                                                                                                                                                                                                                                                                                               
第一頁 上一頁 下一頁 最後一頁 top