廖怡雯 (2005) 十字花科黑腐病菌緊急求救反應之探討。國立中興大學分子生物學研究所碩士論文。
鄭巧蕾 (2003) 十字花科黑腐病菌兩套lexA 基因之功能與研究分析。國立中興大
學分子生物學研究所碩士論文。
李馥君 (2003) 利用luxAB 報導基因探討Xanthomonas campestris pv. campestris
緊急求救反應之調控機制。國立中興大學分子生物學研究所碩士論文。
張瑜鳳 (2002) 線狀噬菌體 φLf 之感染需要宿主之 pilL 基因參與。國立中興大
學分子生物學研究所碩士論文。
吳順吉 (2002) Xanthomonas campestris pv. campestris engXCA 基因之轉錄調控。
國立中興大學分子生物學研究所碩士論文。
Abella, M., Erill, I., Jara, M., Mazón, G., Campoy, S. and Barbé, J. (2004)
Widespread distribution of a lexA-regulated DNA damage-inducible multiple
gene cassette in the Proteobacteria phylum. Mol Microbiol 54: 212-22.
Berardini, M., Foster, P.L. and Loechler, E.L. (1999) DNA polymerase II (polB) is
involved in a new DNA repair pathway for DNA interstrand cross-links in
Escherichia coli. J Bacteriol 181: 2878-82.
Bonacossa de Almeida, C., Coste, G., Sommer, S. and Bailone, A. (2002)
Quantification of RecA protein in Deinococcus radiodurans reveals
involvement of RecA, but not LexA, in its regulation. Mol Genet Genomics
268: 28-41.
Camerini-Otero, R.D. and Hsieh, P. (1995) Homologous recombination protein in
prokaryotes and eukaryotes. Ann Rev Genet 29: 509-52.
Campoy, S., Mazon, G., Fernandez de Henestrosa, A.R., Llagostera, M.,
Monteiro, P.B. and Barbe, J. (2002) A new regulatory DNA motif of the
gamma subclass Proteobacteria: identification of the LexA protein binding
site of the plant pathogen. Xylella fastidiosa. Microbiology 148: 3583-97.
Cegielska, A. and Taylor, A. (1985) The sfiA11 mutation prevents filamentation in a
response to cell wall damage only in a recA+ genetic background. Mol Gen
Genet 201: 537-42.
Cheo, D.L., Bayles, K.W. and Yasbin, R.E. (1991) Cloning and characterization of
DNA damage-inducible promoter regions from Bacillus subtilis. J Bacteriol
173: 1696-703.
Clark, A.J. and Margulies, A. (1965) Isolation and characterization of
recombination, deficient mutants of Escherichia coli K12. Proc Natl Acad Sci
USA 53: 451-9.
Clark, A.J. (1973) Recombination deficient mutants of E. coli and other bacteria. Ann
Rev Genet 7: 67-86.
Courcelle, J., Khodursky, A., Peter, B., Brown, P.O. and Hanawalt, P.C. (2001)
Comparative gene expression profiles following UV exposure in wild-type
and SOS-deficient Escherichia coli. Genetics 158: 41-64.
Cuñé, J., Cullen, P., Mazon, G., Campoy, S., Adler, B. and Barbe, J. (2005) The
Leptospira interrogans lexA gene is not autoregulated. J Bacteriol 187:
5841-5.
Daniels, M.J., Barber, C.E., Turner, P.C., Cleary, W.G. and Sawczyc, M.K. (1984)
Isolation of mutants of Xanthomonas campestris showing altered
pathogenicity. Microbiology 130: 2447-55.
Davis, E.O., Springer, B., Gopaul, K.K., Papavinasasundaram, K.G., Sander, P.
and Bottger, E.C. (2002) DNA damage induction of recA in Mycobacterium
tuberculosis independently of RecA and LexA. Mol Microbiol 46: 791-800.
de Lorenzo, V., Herrero, M., Jakubzik, U. and Timmis, K.N. (1990) Mini-Tn5
transposon derivatives for insertion mutagenesis, promoter probing, and
chromosomal insertion of cloned DNA in Gram-negative eubacteria. J
Bacteriol 172: 6568-72.
Drees, J.C., Lusetti, S.L. and Cox, M.M. (2004a) Inhibition of RecA protein by the
Escherichia coli RecX protein. J Biol Chem 279: 52991-7.
Drees, J. C., Lusetti, S. L., Chitteni-Pattu, S., Inman, R. B., and Cox, M.M.
(2004b) A RecA filament capping mechanism for RecX protein. Mol Cell 15:
789-98.
Dressler, D. and Potter, H. (1982) Molecular mechanisms in genetic recombination.
Annu Rev Genet 51: 727-61.
Eisen, J.A. (1995) The RecA protein as a model molecular for molecular systematic
studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the
same species. J Mol Evol 41: 1105-1123.
Epshtein, V., Toulmé, F., Rahmouni, A.R., Borukhov, S. and Nudler, E. (2003)
Transcription through the roadblocks: the role of RNA polymerase
cooperation. EMBO J 22: 4719-27
Erill, I., Escribano, M., Campoy, S. and Barbe, J. (2003) In silico analysis reveals
substantial variability in the gene contents of the gamma Proteobacteria
LexA-regulon. Bioinformatics 19: 2225-36.
Fernandez de Henestrosa, A.R., Cuñé, J., Mazon, G., Dubbels, B.L., Bazylinski,
D.A. and Barbe, J. (2003) Characterization of a new LexA binding motif in
the marine magnetotactic bacterium strain MC-1. J Bacteriol 185: 4471-82.
Fernandez de Henestrosa, A.R., Ogi, T., Aoyagi, S., Chafin, D., Hayes, J.J.,
Ohmori, H. and Woodgate, R. (2000) Identification of additional genes
belonging to the LexA regulon in Escherichia coli. Mol Microbiol 35:
1560-72.
Fischer, W. and Haas, R. (2004) The RecA protein of Helicobacter pylori requires a
posttranslational modification for full activity. J Bacteriol 186: 777-84.
Fogh, R.H., Ottleben, G., Ruterjans, H., Schnarr, M., Boelens, R. and Kaptein, R.
(1994) Solution structure of the LexA repressor DNA binding domain
determined by 1H NMR spectroscopy. EMBO J 13: 3936-44.
Fowler, R.G., White, S.J., Koyama, C., Moore, S.C., Dunn, R.L. and Schaaper,
R.M. (2003) Interactions among the Escherichia coli mutT, mutM, and mutY
damage prevention pathways. DNA Repair 2: 159-73.
Friedberg, E.C., Walker, G.C. and Siede, W. (1995) DNA Repair and Mutagenesis.
American Society Microbiology Press, Washington, D.C.
Friedman, N., Vardi, S., Ronen, M., Alon, U. and Stavans, J. (2005) Precise
temporal modulation in the response of the SOS DNA repair network in
individual bacteria. PLoS Biol 3: 1261-8.
Gudas, L.J. and Mount, D.W. (1997) Identification of the recA (tif) gene product of
Escherichia coli. Proc Natl Acad Sci U S A 74: 5280-4.
Hamilton, M., Aldea, M., Washburn, B.K., Babitzke, P. and Kushner, S.R. (1989)
New method for generating deletions and gene replacements in Escherichia
coli. J Bacteriol 171: 4617-22.
Hamoen, L.W., Haijema, B., Bijlsma, J.J., Venema, G. and Lovett, C.M. (2001)
The Bacillus subtilis competence transcription factor, ComK, overrides
LexA-imposed transcriptional inhibition without physically displacing LexA.
J Biol Chem 276: 42901-7.
He, B. and Zalkin, H. (1992) Repression of E. coli purB is by a transcriptional
roadblock mechanism. J Bacteriol 174: 7121-7.
Higashitani, A., Higashitani, N. and Horiuchi, K. (1995) A cell division inhibitor
SulA of Escherichia coli directly interacts with FtsZ through GTP hydrolysis.
Biochem Biophys Res Commun 209: 198-204.
Horii, T., Ogawa, T. and Ogawa, H. (1980) Organization of the recA gene of
Escherichia coli. Proc Natl Acad Sci USA 77: 313-7.
Jara, M., Nunez, C., Campoy, S., Fernandez de Henestrosa, A.R., Lovley, D.R.
and Barbe, J. (2003) Geobacter sulfurreducens has two autoregulated lexA
genes whose products do not bind the recA promoter: differing responses of
lexA and recA to DNA damage. J Bacteriol 185: 2493-502.
Karlin, S. and Brocchieri, L. (1996) Evolutionary conservation of recA genes in
relation to protein structure and function. J Bacteriol 178: 1881-94.
Khill, P.P., Canerini-Otero, RD. (2002) Over 1000 genes are involved in the DNA
damage response of Escherichia coli. Molecular Microbiology 44: 89-105.
Kilstrup, M. and Martinussen, J. (1998) A transcriptional activator, homologous to
the Bacillus subtilis PurR repressor, is required for expression of purine
biosynthetic genes in Lactococcus lactis. J Bacteriol 180: 3907-16.
Kim, S.R., Maenhaut-Michel, G., Yamada, M., Yamamoto, Y., Matsui, K., Sofuni,
T., Nohmi, T. and Ohmori, H. (1997) Multiple pathways for SOS-induced
mutagenesis in Escherichia coli: an overexpression of dinB/dinP results in
strongly enhancing mutagenesis in the absence of any exogenous treatment to
damage DNA. Proc Natl Acad Sci USA 94: 13792-7.
Kingsley, M.T., Gabriel, D.W., Marlow, G.C. and Roberts, P.D. (1993) The opsX
locus of Xanthomonas campestris affects host range and biosynthesis of
lipopolysaccharide and extracellular polysaccharide. J Bacteriol 175: 5839-50.
Knegtel, R.M., Fogh, R.H., Ottleben, G., Ruterjans, H., Dumoulin, P., Schnarr,
M., Boelens, R. and Kaptein, R. (1995) A model for the LexA repressor
DNA complex. Proteins 21: 226-236.
Koch, W.H., and Woodgate, R. (1998) The SOS response. In DNA Damage and
Repair: DNA Repair in Prokaryotes and Lower Eukaryotes. Nickoloff, J.A.,
and Hoekstra, M.F. (eds). Totowa, NJ: Humana Press, pp. 107-34.
Kowalczykowski, S.C., Dixon, D.A., Eggleston, A.K., Lauder, S.D. and Rehrauer,
W.M. (1994) Biochemistry of homologous recombination in Escherichia coli.
Microbiol Rev 58: 401-65.
Kumar, S., Lipman, R. and Tomasz, M. (1992) Recognition of specific DNA
sequences by mitomycin C for alkylation. Biochemistry 31: 1399-407.
Kuzminov, A. (1999) Recombinational repair of DNA damage in Escherichia coli
and bacteriophage lambda. Microbiol Mol Biol Rev 63: 751-813.
Lee, H.W., Choe, Y.H., Kim, D.K., Jung, S.Y. and Lee, N.G. (2004) Proteomic
analysis of a ferric uptake regulator mutant of Helicobacter pylori: regulation
of Helicobacter pylori gene expression by ferric uptake regulator and iron.
Proteomics 4: 2014-27.
Lee, T.C., Lin, N.T. and Tseng, Y.H. (1996) Isolation and characterization of the
recA gene of Xanthomonas campestris pv. campestris. Biochem Biophys Res
Commun 221: 459-465.
Lin, C.G., Kovalsky, O. and Grossman, L. (1997) DNA damage-dependent
recruitment of nucleotide excision repair and transcription proteins to
Escherichia coli inner membranes. Nucleic Acids Res 25: 3151-8.
Little, J.W., Edmiston, S.H., Pacelli, L.Z. and Mount, D.W. (1980) Cleavage of the
Escherichia coli LexA protein by the RecA protease. Proc Natl Acad Sci USA
77: 3225-9.
Little, J.W. and Mount, D.W. (1982) The SOS regulatory system of Escherichia coli.
Cell 29: 11-22.
Luo, Y., Pfuetzner, R.A., Mosimann, S., Paetzel, M., Frey, E.A., Cherney, M.,
Kim, B., Little, J.W. and Strynadka, N.C. (2001) Crystal structure of LexA:
a conformational switch for regulation of self-cleavage. Cell 106: 585-94.
Lusetti, S.L., Drees, J.C., Stohl, E.A., Seifert, H.S. and Cox, M.M. (2004) The
DinI and RecX proteins are competing modulators of RecA function. J Biol
Chem 53: 55073-9.
Mazon, G., Lucena, J.M., Campoy, S., Fernandez de Henestrosa, A.R., Candau, P.
and Barbe, J. (2004) LexA-binding sequences in Gram-positive and
Cyanobacteria are closely related. Mol Genet Genomics 271: 40-9.
McDonald, J.P., Maury, E.E., Levine, A.S. and Woodgate, R. (1998) Regulation of
UmuD cleavage: role of the amino-terminal tail. J Mol Biol 282: 721-30.
Merlin, C., McAteer, S. and Masters, M. (2002) Tools for characterization of
Escherichia coli genes of unknown function. J Bacteriol 184: 4573-81.
Miller, R.V. and Kokjohn, T.A. (1990) General microbiology of recA:
Environmental and evolutionary significance. Annu Rev Microbiol 44: 364-94.
Nahrstedt, H., Schroder, C. and Meinhardt, F. (2005) Evidence for two recA genes
mediating DNA repair in Bacillus megaterium. Microbiology 151: 775-87.
Opperman, T., Murli, S., Smith, B.T. and Walker, G.C. (1999) A model for a
umuDC-dependent prokaryotic DNA damage checkpoint. Proc Natl Acad Sci
USA 96: 9218-23.
Ottleben, G., Messori, L., Ruterjans, H., Kaptein, R., Granger-Schnarr, M. and
Schnarr, M. (1991) 1H-NMR investigation of the interaction of the amino
terminal domain of the LexA repressor with a synthetic half-operator. J Biomol
Struct Dyn 9: 447-61.
Phizicky, E.M. and Roberts, J.W. (1981) Induction of SOS functions: regulation of
proteolytic activity of E. coli RecA protein by interaction with DNA and
nucleoside triphosphate. Cell 25: 259-67.
Radman, M. (1975) SOS repair hypothesis: phenomenology of an inducible DNA
repair which is accompanied by mutagenesis. Basic Life Sci 5A: 355-67.
Rivera, E., Vila, L. and Barbe, J. (1996) The uvrB gene of Pseudomonas aeruginosa
is not DNA damage inducible. J Bacteriol 178: 5550-4.
Roca, A.I. and Cox, M.M. (1990) The RecA protein: structure and function. Crit Rev
Biochem Mol Biol 25: 415-56.
Sambrook, J., and Russell, D.W. (2001) Moleculr Cloning : A Laboratory Manual,
3th ed., Clod Spring Harbor Labor Laboratory Press, Cold Spring Harbor,
NY.
Sassanfar, M. and Roberts, J.W. (1990) Nature of the SOS-inducing signal in
Escherichia coli. The involvement of DNA replication. J Mol Biol 212: 79-96.
Sattin B.D. and Goh M.C. (2004) Novel polymorphism of recA fibrils revealed by
atomic force microscopy. J Biol Phys 00: 1-4
Schnarr, M., Granger-Schnarr, M., Hurstel, S. and Pouyet, J. (1988) The
carboxyl-terminal domain of the LexA repressor oligomerises essentially as
the entire protein. FEBS Lett 234: 56-60.
Schweizer, H.P. (1993) Small broad-host-range gentamycin resistance gene casettes
for site-specific insertion and deletion mutagenesis. BioTechniques 15: 831-3.
Slilaty, S.N. and Little, J.W. (1987) Lysine-156 and serine-119 are required for LexA
repressor cleavage: a possible mechanism. Proc Natl Acad Sci USA 84:
3987-91.
Slilaty, S.N., Rupley, J.A. & Little, J.W. (1986) Intramolecular cleavage of LexA
and phage λ repressors: dependence of kinetics on repressor concentration, pH,
temperature and solvent. Biochemistry 25: 6866-75.
Smith, G.R. (1988) Homologous recombination in prokaryotes. Microbiol Rev 52:
1-28.
Stohl, E.A., Brockman, J.P., Burkle, K.L., Morimatsu, K., Kowalczykowski, S.C.,
and Siefert, H.S. (2003) Escherichia coli RecX inhibits RecA recombinase
and coprotease activities in vitro and in vivo. J Biol Chem 278: 2278-85.
Sukchawalit, R., Vattanaviboon, P., Sallabhan, R. and Mongkolsuk, S. (1999)
Construction and characterization of regulated L-arabinose-inducible broad
host range expression vectors in Xanthomonas. FEMS Microbiol Lett 181:
217-23.
Su, M.J., Lai, M.C., Weng, S.F. and Tseng, Y.H. (1990) Characterization of phage
φL7 and transfection of Xanthomonas campestris pv. campestris by the phage
DNA. Bot Bull Acad Sin 31: 197-203.
Sutherland, I.W. and Ellwood D.C. (1979) Microbial exopolysaccharides industrial
polymers of current and future potential. Symposium of Society of General
Microbiology 29: 107-50.
Sutton, M.D., Opperman, T., Walker, G.C. (1999) The Escherichia coli SOS
mutagenesis proteins UmuD and UmuD'' interact physically with the
replicative DNA polymerase. Proc Natl Acad Sci USA 96: 12373-8.
Tang, M., Bruck, I., Eritja, R., Turner, J., Frank, E.G., Woodgate, R., O''Donnell,
M. and Goodman, M.F. (1998) Biochemical basis of SOS-induced
mutagenesis in Escherichia coli: reconstitution of in vitro lesion bypass
dependent on the UmuD''2C mutagenic complex and RecA protein. Proc Natl
Acad Sci USA 95: 9755-60.
Tapias, A., Fernandez, S., Alonso, J.C. and Barbe, J. (2002) Rhodobacter
sphaeroides LexA has dual activity: optimising and repressing recA gene
transcription. Nucleic Acids Res 30: 1539-46.
Tomasz, M., Lipman, R., Chowdary, D., Pawlak, J., Verdine, G.L. and Nakanishi,
K. (1987) Isolation and structure of a covalent cross-link adduct between
mitomycin C and DNA. Science 235: 1204-8.
Vieira, J. and Messing, J. (1991) New pUC-derived cloning vectors with different
selectable markers and DNA replication origins. Gene 100: 189-94.
Walker, G.C. (1984) Mutagenesis and inducible responses to deoxyribonucleic acid
damage in Escherichia coli. Microbiol Rev 48: 60-93.
Walker, G.C., Marsh, L. and Dodson, L. (1985) Cellular responses to DNA damage.
Environ Health Perspect 62: 115-7.
William, P.H. (1980) Black rot: a continuing treat to world crucifers. Plant Dis 64:
736-42.
Yalpani, M., and Sanford, P.A. (1987) Commercial polyshaccharides: recent trends
and developments. Amsterdam Elsecier pp.331.
Yang, B.Y., and Tseng, Y.H. (1988) Production of exopolysaccharide and levels of
protease and pectinase activity in pathogenic and non-pathogenic strains of
Xanthomonas campestris pv. campestris. Bot Bull Acad Sin 29: 93-9.
Yang, S., Yu, X., Seitz, E.M., Kowalczykowski, S.C. and Egelman, E.H. (2001)
Archaeal RadA protein binds DNA as both helical filaments and octameric
rings. J Mol Biol 314: 1077-85.
Yanisch-Perron, C., Vieira, J. and Messing, J. (1985) Improved M13 phage cloning
vectors and host strains: nucleotide sequences of the M13mp18 and pUC19
vectors. Gene 33: 103-19.
Yu, X. and Egelman, E.H. (1997) The recA hexamer is a structural homologue of
ring helicases. Nat Struct Biol 4: 101-4.
.