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研究生:張勤斌
研究生(外文):Chirn-Bin Chang
論文名稱:應用化學蛋白質體學方法純化並分析絲胺酸與酥胺酸磷酸化之胜肽與蛋白質的特性
論文名稱(外文):Application of chemical proteomics to enrich and characterize the serine/threonine phosphopeptides/phosphoproteins
指導教授:林照雄林照雄引用關係
指導教授(外文):Chao-Hsiung Lin
學位類別:碩士
校院名稱:國立陽明大學
系所名稱:生物化學研究所
學門:生命科學學門
學類:生物化學學類
論文種類:學術論文
論文出版年:2005
畢業學年度:93
語文別:英文
論文頁數:90
中文關鍵詞:磷酸化質譜儀二維電泳金屬親和性層析法
外文關鍵詞:beta-eliminationMichael additionbiotinylationv-Srcp53Aurora kinase A
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磷酸化是常見且相當重要的蛋白質修飾,這類修飾對於細胞中蛋白質的功能和調節有重要的影響,通常發生於酪胺酸,絲胺酸和酥胺磷上。然而除了磷酸化酪胺酸有適當抗體可作為分析的工具之外,目前因為缺乏有效而直接的分析方法,所以對於絲胺酸和酥胺酸磷酸化全面性的分析並沒有太多的成果。最近,許多利用化學修飾的方法來選擇性地純化絲胺酸/酥胺磷酸化蛋白質的方法被提出來。在我的實驗中我有效地利用金屬親和性層析法進行β-elimination/aminoethanethiol addition來分離出絲胺酸/酥胺磷酸化胜肽並以質譜儀正確地鑑定出胜肽上有絲胺酸/酥胺磷酸化的位置。 利用這一技術可以正確找出合成的酥胺磷酸化胜肽和阿爾發-酪蛋白上有磷酸化的絲胺酸/酥胺磷。除此之外,利用這方法也可找出p53和Pum2H在胞外被aurora kinase A磷酸化後產生磷酸化絲胺酸的位置。同理,亦可將β-elimination/biotin tagging配合上二維電泳將有絲胺酸/酥胺磷酸化蛋白質純化出來並分析其表現量的不同。利用此方法我分析了RK3E-RCAN和v-Src transformed RK3E中絲胺酸/酥胺磷酸化蛋白質表現的不同模式。其中因v-Src而有表現量不同的蛋白質將進行質譜儀的鑑定。在比較二維電泳膠片後,總共找到有15個有差異的蛋白質。其中Annexin I已知是Src的受質,而它的功能受到其胜肽中絲胺酸,酥胺磷和酪胺酸是否磷酸化的調節。所以,利用這一技術可以純化絲胺酸/酥胺磷酸化的蛋白質並分析它們在兩種狀態下的表現量。而這些訊息將有助於我們了解有那一些蛋白質的功能會受到它磷酸化狀態的影響。在這一些找到受v-Src轉化而表現有差異的蛋白質則需要更多的實驗來證明它們在細胞中的角色以及磷酸化對它們功能的影響。
Phosphorylation is among the most common and important protein modifications which are crucial for protein functions and regulations in cellular processes. Currently global analysis of serine/threonine phosphorylation remains largely unexplored due to lack of direct analysis tools. A number of chemical modification techniques were recently reported to selectively enrich serine/threonine phosphorylated proteins. In my work, application of on immobilized metal affinity chromatographyβ-elimination/aminoethanethiol addition to enrich phosphopeptides from peptides mixtures and determine the definite sites of phosphorylation are established. Through this approach, the phosphorylation sites of synthetic phosphopeptide and ��-casein are definitely identified. In addition, the sites of p53 and Pum2H subjected to in-vitro phosphorylation by aurora kinase A are also identified. This approach can be a tool to enrich the phosphopeptides from peptide mixture and definitely determine the serine/threonine phosphorylation site. Alternatively, β-elimination/biotin tagging can be combined with the two-dimensional gel electrophoresis to enrich and characterize the serine/threonine phosphoproteins. The serine/threonine phosphorylation profiles of RK3E-RCAN and v-Src transformed RK3E cells were established through this approach. Several proteins with differential phosphorylation status related to v-Src-induced transformation were further identified by mass spectrometric analysis. Totally, 15 differential expressed proteins in 2D-gel were identified and several of them have known serine/threonine phosphorylation site. Among the identified differential expressed proteins, Annexin I is a known substrate of Src. The function of Annexin I is related to its serine, threonine, and tyrosine phosphorylation sites. Through the chemical tagging approach, the serine/threonine phosphoproteins can be enriched and characterized. This information gives us clues to that which proteins were subjected to the serine/threonine phosphorylation regulation. Further studies are needed to reveal the function of individual protein and the effects of its phosphorylation in the v-Src transformed cells.
Ahn, Y. H., Park, E. J., Cho, K., Kim, J. Y., Ha, S. H., Ryu, S. H., and Yoo, J. S. (2004). Dynamic identification of phosphopeptides using immobilized metal ion affinity chromatography enrichment, subsequent partial beta-elimination/chemical tagging and matrix-assisted laser desorption/ionization mass spectrometric analysis. Rapid Commun Mass Spectrom 18, 2495-2501.

Annan, W. D., Manson, W., and Nimmo, J. A. (1982). The identification of phosphoseryl residues during the determination amino acid sequence in phosphoproteins. Anal Biochem 121, 62-68.

Ballif, B. A., Villen, J., Beausoleil, S. A., Schwartz, D., and Gygi, S. P. (2004). Phosphoproteomic analysis of the developing mouse brain. Mol Cell Proteomics 3, 1093-1101.

Blake, R. A., Garcia-Paramio, P., Parker, P. J., and Courtneidge, S. A. (1999). Src promotes PKCdelta degradation. Cell Growth Differ 10, 231-241.

Carr, S. A., Huddleston, M. J., and Annan, R. S. (1996). Selective detection and sequencing of phosphopeptides at the femtomole level by mass spectrometry. Anal Biochem 239, 180-192.

Ficarro, S. B., McCleland, M. L., Stukenberg, P. T., Burke, D. J., Ross, M. M., Shabanowitz, J., Hunt, D. F., and White, F. M. (2002). Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat Biotechnol 20, 301-305.

Fukata, Y., Kimura, K., Oshiro, N., Saya, H., Matsuura, Y., and Kaibuchi, K. (1998). Association of the myosin-binding subunit of myosin phosphatase and moesin: dual regulation of moesin phosphorylation by Rho-associated kinase and myosin phosphatase. J Cell Biol 141, 409-418.

Gaberc-Porekar, V., and Menart, V. (2001). Perspectives of immobilized-metal affinity chromatography. J Biochem Biophys Methods 49, 335-360.

Hakansson, K., Cooper, H. J., Emmett, M. R., Costello, C. E., Marshall, A. G., and Nilsson, C. L. (2001). Electron capture dissociation and infrared multiphoton dissociation MS/MS of an N-glycosylated tryptic peptic to yield complementary sequence information. Anal Chem 73, 4530-4536.

Hayduk, E. J., Choe, L. H., and Lee, K. H. (2004). A two-dimensional electrophoresis map of Chinese hamster ovary cell proteins based on fluorescence staining. Electrophoresis 25, 2545-2556.

Katayama, H., Brinkley, W. R., and Sen, S. (2003). The Aurora kinases: role in cell transformation and tumorigenesis. Cancer Metastasis Rev 22, 451-464.

Katayama, H., Sasai, K., Kawai, H., Yuan, Z. M., Bondaruk, J., Suzuki, F., Fujii, S., Arlinghaus, R. B., Czerniak, B. A., and Sen, S. (2004). Phosphorylation by aurora kinase A induces Mdm2-mediated destabilization and inhibition of p53. Nat Genet 36, 55-62.

Kelleher, N. L., Zubarev, R. A., Bush, K., Furie, B., Furie, B. C., McLafferty, F. W., and Walsh, C. T. (1999). Localization of labile posttranslational modifications by electron capture dissociation: the case of gamma-carboxyglutamic acid. Anal Chem 71, 4250-4253.

Kim, Y. S., Ko, J., Kim, I. S., Jang, S. W., Sung, H. J., Lee, H. J., Lee, S. Y., Kim, Y., and Na, D. S. (2003). PKCdelta-dependent cleavage and nuclear translocation of annexin A1 by phorbol 12-myristate 13-acetate. Eur J Biochem 270, 4089-4094.

Li, W., Backlund, P. S., Boykins, R. A., Wang, G., and Chen, H. C. (2003). Susceptibility of the hydroxyl groups in serine and threonine to beta-elimination/Michael addition under commonly used moderately high-temperature conditions. Anal Biochem 323, 94-102.

Liu, Q., Kaneko, S., Yang, L., Feldman, R. I., Nicosia, S. V., Chen, J., and Cheng, J. Q. (2004). Aurora-A abrogation of p53 DNA binding and transactivation activity by phosphorylation of serine 215. J Biol Chem 279, 52175-52182.

Lu, Z., Hornia, A., Jiang, Y. W., Zang, Q., Ohno, S., and Foster, D. A. (1997). Tumor promotion by depleting cells of protein kinase C delta. Mol Cell Biol 17, 3418-3428.

Maga, G., and Hubscher, U. (2003). Proliferating cell nuclear antigen (PCNA): a dancer with many partners. J Cell Sci 116, 3051-3060.

Marshall, A. G., Hendrickson, C. L., and Jackson, G. S. (1998). Fourier transform ion cyclotron resonance mass spectrometry: a primer. Mass Spectrom Rev 17, 1-35.

Marshall, A. G., Hendrickson, C. L., and Shi, S. D. (2002). Scaling MS plateaus with high-resolution FT-ICRMS. Anal Chem 74, 252A-259A.

Martensen, T. M. (1984). Chemical properties, isolation, and analysis of O-phosphates in proteins. Methods Enzymol 107, 3-23.

Martensen, T. M., and Levine, R. L. (1983). Base hydrolysis and amino acid analysis for phosphotyrosine in proteins. Methods Enzymol 99, 402-405.

Oda, Y., Nagasu, T., and Chait, B. T. (2001). Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome. Nat Biotechnol 19, 379-382.

Oshiro, N., Fukata, Y., and Kaibuchi, K. (1998). Phosphorylation of moesin by rho-associated kinase (Rho-kinase) plays a crucial role in the formation of microvilli-like structures. J Biol Chem 273, 34663-34666.

Owen, P. J., Johnson, G. D., and Lord, J. M. (1996). Protein kinase C-delta associates with vimentin intermediate filaments in differentiated HL60 cells. Exp Cell Res 225, 366-373.

Posewitz, M. C., and Tempst, P. (1999). Immobilized gallium(III) affinity chromatography of phosphopeptides. Anal Chem 71, 2883-2892.

Puente, L. G., Carriere, J. F., Kelly, J. F., and Megeney, L. A. (2004). Comparative analysis of phosphoprotein-enriched myocyte proteomes reveals widespread alterations during differentiation. FEBS Lett 574, 138-144.

Simpson, D. L., Hranisavljevic, J., and Davidson, E. A. (1972). Elimination and sulfite addition as a means of localization and identification of substituted seryl and threonyl residues in proteins and proteoglycans. Biochemistry 11, 1849-1856.

Song, J. S., Swann, P. G., Szallasi, Z., Blank, U., Blumberg, P. M., and Rivera, J. (1998). Tyrosine phosphorylation-dependent and -independent associations of protein kinase C-delta with Src family kinases in the RBL-2H3 mast cell line: regulation of Src family kinase activity by protein kinase C-delta. Oncogene 16, 3357-3368.
Thaler, F., Valsasina, B., Baldi, R., Xie, J., Stewart, A., Isacchi, A., Kalisz, H. M., and Rusconi, L. (2003). A new approach to phosphoserine and phosphothreonine analysis in peptides and proteins: chemical modification, enrichment via solid-phase reversible binding, and analysis by mass spectrometry. Anal Bioanal Chem 376, 366-373.

Thompson, A. J., Hart, S. R., Franz, C., Barnouin, K., Ridley, A., and Cramer, R. (2003). Characterization of protein phosphorylation by mass spectrometry using immobilized metal ion affinity chromatography with on-resin beta-elimination and Michael addition. Anal Chem 75, 3232-3243.

Unwin, R. D., Sternberg, D. W., Lu, Y., Pierce, A., Gilliland, D. G., and Whetton, A. D. (2005). Global effects of BCR/ABL and TEL/PDGFRbeta expression on the proteome and phosphoproteome: identification of the Rho pathway as a target of BCR/ABL. J Biol Chem 280, 6316-6326.

Valineva, T., Yang, J., Palovuori, R., and Silvennoinen, O. (2005). The transcriptional co-activator protein p100 recruits histone acetyltransferase activity to STAT6 and mediates interaction between the CREB-binding protein and STAT6. J Biol Chem 280, 14989-14996.

Yang, J., Aittomaki, S., Pesu, M., Carter, K., Saarinen, J., Kalkkinen, N., Kieff, E., and Silvennoinen, O. (2002). Identification of p100 as a coactivator for STAT6 that bridges STAT6 with RNA polymerase II. Embo J 21, 4950-4958.

Zang, Q., Lu, Z., Curto, M., Barile, N., Shalloway, D., and Foster, D. A. (1997). Association between v-Src and protein kinase C delta in v-Src-transformed fibroblasts. J Biol Chem 272, 13275-13280.

Zhong, M., Lu, Z., and Foster, D. A. (2002). Downregulating PKC delta provides a PI3K/Akt-independent survival signal that overcomes apoptotic signals generated by c-Src overexpression. Oncogene 21, 1071-1078.
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