|
Ahn, Y. H., Park, E. J., Cho, K., Kim, J. Y., Ha, S. H., Ryu, S. H., and Yoo, J. S. (2004). Dynamic identification of phosphopeptides using immobilized metal ion affinity chromatography enrichment, subsequent partial beta-elimination/chemical tagging and matrix-assisted laser desorption/ionization mass spectrometric analysis. Rapid Commun Mass Spectrom 18, 2495-2501.
Annan, W. D., Manson, W., and Nimmo, J. A. (1982). The identification of phosphoseryl residues during the determination amino acid sequence in phosphoproteins. Anal Biochem 121, 62-68.
Ballif, B. A., Villen, J., Beausoleil, S. A., Schwartz, D., and Gygi, S. P. (2004). Phosphoproteomic analysis of the developing mouse brain. Mol Cell Proteomics 3, 1093-1101.
Blake, R. A., Garcia-Paramio, P., Parker, P. J., and Courtneidge, S. A. (1999). Src promotes PKCdelta degradation. Cell Growth Differ 10, 231-241.
Carr, S. A., Huddleston, M. J., and Annan, R. S. (1996). Selective detection and sequencing of phosphopeptides at the femtomole level by mass spectrometry. Anal Biochem 239, 180-192.
Ficarro, S. B., McCleland, M. L., Stukenberg, P. T., Burke, D. J., Ross, M. M., Shabanowitz, J., Hunt, D. F., and White, F. M. (2002). Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat Biotechnol 20, 301-305.
Fukata, Y., Kimura, K., Oshiro, N., Saya, H., Matsuura, Y., and Kaibuchi, K. (1998). Association of the myosin-binding subunit of myosin phosphatase and moesin: dual regulation of moesin phosphorylation by Rho-associated kinase and myosin phosphatase. J Cell Biol 141, 409-418.
Gaberc-Porekar, V., and Menart, V. (2001). Perspectives of immobilized-metal affinity chromatography. J Biochem Biophys Methods 49, 335-360.
Hakansson, K., Cooper, H. J., Emmett, M. R., Costello, C. E., Marshall, A. G., and Nilsson, C. L. (2001). Electron capture dissociation and infrared multiphoton dissociation MS/MS of an N-glycosylated tryptic peptic to yield complementary sequence information. Anal Chem 73, 4530-4536.
Hayduk, E. J., Choe, L. H., and Lee, K. H. (2004). A two-dimensional electrophoresis map of Chinese hamster ovary cell proteins based on fluorescence staining. Electrophoresis 25, 2545-2556.
Katayama, H., Brinkley, W. R., and Sen, S. (2003). The Aurora kinases: role in cell transformation and tumorigenesis. Cancer Metastasis Rev 22, 451-464.
Katayama, H., Sasai, K., Kawai, H., Yuan, Z. M., Bondaruk, J., Suzuki, F., Fujii, S., Arlinghaus, R. B., Czerniak, B. A., and Sen, S. (2004). Phosphorylation by aurora kinase A induces Mdm2-mediated destabilization and inhibition of p53. Nat Genet 36, 55-62.
Kelleher, N. L., Zubarev, R. A., Bush, K., Furie, B., Furie, B. C., McLafferty, F. W., and Walsh, C. T. (1999). Localization of labile posttranslational modifications by electron capture dissociation: the case of gamma-carboxyglutamic acid. Anal Chem 71, 4250-4253.
Kim, Y. S., Ko, J., Kim, I. S., Jang, S. W., Sung, H. J., Lee, H. J., Lee, S. Y., Kim, Y., and Na, D. S. (2003). PKCdelta-dependent cleavage and nuclear translocation of annexin A1 by phorbol 12-myristate 13-acetate. Eur J Biochem 270, 4089-4094.
Li, W., Backlund, P. S., Boykins, R. A., Wang, G., and Chen, H. C. (2003). Susceptibility of the hydroxyl groups in serine and threonine to beta-elimination/Michael addition under commonly used moderately high-temperature conditions. Anal Biochem 323, 94-102.
Liu, Q., Kaneko, S., Yang, L., Feldman, R. I., Nicosia, S. V., Chen, J., and Cheng, J. Q. (2004). Aurora-A abrogation of p53 DNA binding and transactivation activity by phosphorylation of serine 215. J Biol Chem 279, 52175-52182.
Lu, Z., Hornia, A., Jiang, Y. W., Zang, Q., Ohno, S., and Foster, D. A. (1997). Tumor promotion by depleting cells of protein kinase C delta. Mol Cell Biol 17, 3418-3428.
Maga, G., and Hubscher, U. (2003). Proliferating cell nuclear antigen (PCNA): a dancer with many partners. J Cell Sci 116, 3051-3060.
Marshall, A. G., Hendrickson, C. L., and Jackson, G. S. (1998). Fourier transform ion cyclotron resonance mass spectrometry: a primer. Mass Spectrom Rev 17, 1-35.
Marshall, A. G., Hendrickson, C. L., and Shi, S. D. (2002). Scaling MS plateaus with high-resolution FT-ICRMS. Anal Chem 74, 252A-259A.
Martensen, T. M. (1984). Chemical properties, isolation, and analysis of O-phosphates in proteins. Methods Enzymol 107, 3-23.
Martensen, T. M., and Levine, R. L. (1983). Base hydrolysis and amino acid analysis for phosphotyrosine in proteins. Methods Enzymol 99, 402-405.
Oda, Y., Nagasu, T., and Chait, B. T. (2001). Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome. Nat Biotechnol 19, 379-382.
Oshiro, N., Fukata, Y., and Kaibuchi, K. (1998). Phosphorylation of moesin by rho-associated kinase (Rho-kinase) plays a crucial role in the formation of microvilli-like structures. J Biol Chem 273, 34663-34666.
Owen, P. J., Johnson, G. D., and Lord, J. M. (1996). Protein kinase C-delta associates with vimentin intermediate filaments in differentiated HL60 cells. Exp Cell Res 225, 366-373.
Posewitz, M. C., and Tempst, P. (1999). Immobilized gallium(III) affinity chromatography of phosphopeptides. Anal Chem 71, 2883-2892.
Puente, L. G., Carriere, J. F., Kelly, J. F., and Megeney, L. A. (2004). Comparative analysis of phosphoprotein-enriched myocyte proteomes reveals widespread alterations during differentiation. FEBS Lett 574, 138-144.
Simpson, D. L., Hranisavljevic, J., and Davidson, E. A. (1972). Elimination and sulfite addition as a means of localization and identification of substituted seryl and threonyl residues in proteins and proteoglycans. Biochemistry 11, 1849-1856.
Song, J. S., Swann, P. G., Szallasi, Z., Blank, U., Blumberg, P. M., and Rivera, J. (1998). Tyrosine phosphorylation-dependent and -independent associations of protein kinase C-delta with Src family kinases in the RBL-2H3 mast cell line: regulation of Src family kinase activity by protein kinase C-delta. Oncogene 16, 3357-3368. Thaler, F., Valsasina, B., Baldi, R., Xie, J., Stewart, A., Isacchi, A., Kalisz, H. M., and Rusconi, L. (2003). A new approach to phosphoserine and phosphothreonine analysis in peptides and proteins: chemical modification, enrichment via solid-phase reversible binding, and analysis by mass spectrometry. Anal Bioanal Chem 376, 366-373.
Thompson, A. J., Hart, S. R., Franz, C., Barnouin, K., Ridley, A., and Cramer, R. (2003). Characterization of protein phosphorylation by mass spectrometry using immobilized metal ion affinity chromatography with on-resin beta-elimination and Michael addition. Anal Chem 75, 3232-3243.
Unwin, R. D., Sternberg, D. W., Lu, Y., Pierce, A., Gilliland, D. G., and Whetton, A. D. (2005). Global effects of BCR/ABL and TEL/PDGFRbeta expression on the proteome and phosphoproteome: identification of the Rho pathway as a target of BCR/ABL. J Biol Chem 280, 6316-6326.
Valineva, T., Yang, J., Palovuori, R., and Silvennoinen, O. (2005). The transcriptional co-activator protein p100 recruits histone acetyltransferase activity to STAT6 and mediates interaction between the CREB-binding protein and STAT6. J Biol Chem 280, 14989-14996.
Yang, J., Aittomaki, S., Pesu, M., Carter, K., Saarinen, J., Kalkkinen, N., Kieff, E., and Silvennoinen, O. (2002). Identification of p100 as a coactivator for STAT6 that bridges STAT6 with RNA polymerase II. Embo J 21, 4950-4958.
Zang, Q., Lu, Z., Curto, M., Barile, N., Shalloway, D., and Foster, D. A. (1997). Association between v-Src and protein kinase C delta in v-Src-transformed fibroblasts. J Biol Chem 272, 13275-13280.
Zhong, M., Lu, Z., and Foster, D. A. (2002). Downregulating PKC delta provides a PI3K/Akt-independent survival signal that overcomes apoptotic signals generated by c-Src overexpression. Oncogene 21, 1071-1078.
|