1.Arnoldo, V. L. and K. M. M. Lwiza, (1995) : The effects of channels and shoals on exchange between the Chesapeake Bay and the adjacent ocean. Journal of Geophysical Research, Vol. 100, No. C9, Pages 18551-18563, September 15, 1994.
2.Aubrey, D.G., Speer, P.E., (1985) : A Study of Non-linear Tidal Propagation in shallow Inlet/Estuarine Systems. Part I: Observatopns. Estuarine, Coastal and Shelf Scirnce 21, 185-205.
3.Blumberg, A.F., Mellor, G.L., (1987) : A description of a three-dimensional coastal ocean circulation model. In: Heaps, N. (Ed.), Three-Dimensional Coastal Ocean Models, In: Coastal and Estuarine Studies, vol.4. AGU, Washington, DC, pp. 1-16.
4.Barron, C.N., Kara, A.B., Martin, P.J., Rhodes, R.C., Smedstad, L.F., (2006) : Formulation, implementation and examination of vertical coordinate choices in the Global Navy Coastal Ocean Model (NCOM). Ocean Modell. 11, 347-375.
5.Brooks D. A., M. W. Baca and Y. T. Lo, (1999) : tidal Circulation and Residence Time in a Macrotidal Estuary : Cobscook Bay, Marine. Estuary, Coastal and Shelf Science, Vol. 49, pp. 647-665, 1999.
6.Casulli, V., Cheng, R.T., (1992) : Semi-implicit finite difference methods for three-dimensional shallow water flow. Int. J. Numer. Methods Fluids 15, 629-648.
7.Casulli, V., Walters, R.A., (2000) : An unstructured grid, three-dimensional model based on the shallow water equations. Int. J. Numer. Methods Fluids 32, 331-348.
8.Casulli, V., Zanolli, P., (2005) : High resolution methods for multidimensional advection-diffusion problems in free-surface hydrodynamics. Ocean Model. 10, 137-151
9.Cerco, C.F., Cole, T.M., (1994) : Three-Dimensional Eutrophication Model of Chwsapeake Bay.
10.Cerco, C.F., Cole, T.M., (1995) : User’s Guide to the CE-QUAL-ICM: Three-Dimensional Eutrophication Model.
11.Chen, C., Liu, H., Beardsley, R.C., (2003) : An unstructured grid, finite-volume, three-dimensional, primitive equations ocean model: application to coastal ocean and estuaries. J. Atmos. Oceanic Technol. 20, 159-186.
12.Chen, C.S., Beardsley, R.C., (2006) : An unstructured grid, fifnite-volume coastal ocean model (FVCOM) System. Oceanography vol. 19, No. 1, Mar, 2006.
13.Iskandarani, M., Haidvogel, D.B., Levin, J.C., (2003) : A three-dimensional spectral element model for the solution of the hydrostatic primitive equations. J. Comput. Phys. 186, 397-425.
14.Kjerfve. B., (1986) : Comparative oceanography of coastal lagoons. Estuarine Variability. Academic Press, New York, U.S.A., pp. 63-881.
15.Luettich, R.A., Westerink, J.J., Scheffner, N.W., (1991) : ADCIRC: an advanced three-dimensional circulation model for shelves, coasts and estuaries. Coast. Engrg. Res. Ct., US Army Engs. Wtrways. Experiment Station, Vicksburg, MS Report 1: Theory and Methodology of ADCIRC-2DDI and ADCIRC-3DL.
16.Luyten, P.J., Jones, J.E., Proctor, R., Tabor, A., Tett, P., Wild-Allen, K., (1999) : COHERENS : A coupled Hydrodynamical-Ecological Model for Regional and Shelf Seas. COHERENS, Released 8.4, September 1999.
17.Lynch, D.R., Werner, F.E., (1991) : Three-dimensional hydrodynamics on finite elements. Part II: non-linear time-stepping model. Int. J. Numer. Methods Fluids 12, 507-533.
18.Oliveira, A., Baptista, A.M., (1998) : On the role of tracking on Eulerian-Lagrangian solutions of the transport equation. Adv. Water Res. 21, 539-554.
19.Manel, G., Almudena, F., Luis, F., Julien, M., Manuel, G., Manuel, E., (2009) : 3D hydrodynamic characterization of a meso-tidal harbor: The case of Bilbao. Coastal Engineering. 56. 2009, 907-918.
20.Manel, G., Gabriel, J., Manuel, E., (2014) : Surface water renewal and mixing mechanisms in a semi-enclosed microtidal domain. The Barcelona harbor case. Journal of Sea Research. 90, 2014, 54-63.
21.Paul Bissett, W., Sharon, D., Daniel, D., (2004) : Ecological Simulation (EcoSim) 2.0 Technical Description. Florida Environmental Research Institute-2004-0002-U-D.
22.Pawlowicz, R., Beardsley, B. and Lentz, S., (2002) : Classical tidal harmonic analysis including error estimates in MATLAB using T_TIDE. Computers and Geosciences 28. 2002, 929-937.
23.Shchepetkin, A.F., McWilliams, J.C., (2005) : The regional oceanic modeling system (ROMS): a split-explicit, free-surface, topography-following-coordinate, oceanic model. Ocean Modell. 9, 347-404.
24.Snowling, S.D., Kramer, J.R., (2001) : Evaluating modelling uncertainty for model selection. Ecological Modelling. 138, 17-30.
25.Song, Y., Haidvogel, D., (1994) : A semi-implicit ocean circulation model using a generalized topography-following coordinate system. J. Comput. Phys. 115, 228-244.
26.Spitz, Y.H., Allen, J.S., Gan, J., (2005) : Modeling of ecosystem processes on the Oregon shelf during the 2001 summer upwelling, Journal of Geophysical Research, VOL. 110, C10S17.
27.Suh, S.W., Kim,J.H., Hwang, I.T., Lee, H.K., (2001) : Water quality simulation on an artificial estuarine lake Shiwhaho, Korea. Journal of Marine System. 45, 2004, 143-158.
28.Thomas, G., Vladimir, G.K., (2007) : Tidal and residual circulation in coupled restricted and leaky lagoons. Estuarine, Coastal and Shelf Science. 77, 2008, 396-408.
29.Van de Kreeke, J., (1988) : Hydrodynamics of tidal inlet. Lecture Notes on Coastal and Estuaries Studies, 29, pp. 1-21.
30.Yoshie, N., Yamanaka, Y., Rose, K.A., Eslinger, D.L.,Ware, D.M., Kishi, M.J., (2007) : Parameter sensitivity of the NEMURO lower trophic level marine ecosystem model. Ecological Modelling. 202, 26-37.
31.Zhang, Y.L., Baptista, A.M., Myers, E.P., (2004) : A cross-scale model for 3D baroclinic circulation in estuary–plume–shelf systems: I. Formulation and skill assessment. Cont. Shelf Res. 24, 2187-2214.
32.Zang, Y.L. and Baptista, A.M., (2008) : “SELFE:A semi-Eulerian-Lagrangian finite-element model for cross-scale ocean circulation.” Ocean Modell. (2008), doi:10.1016.ocemod.2007.11.005
33.尤皓正、江朕榮、于嘉順、蘇青和 (2007) : 台中港結構對近岸流場的影響,第29屆海洋工程研討會論文集,第153-158頁。
34.張穎昌 (2011) : 以三維數值海流模式探討潮口改善工程對大鵬灣水體交換之影響,國立中山大學海洋環境及工程學系碩士論文。35.孫佩君、曾若玄、蘇青和, (1999) : 高雄港港池流場的數值模擬與現場觀測。
36.蔡致維, (2004) : 愛河之水文研究,國立中山大學海洋資源研究所碩士論文。37.蘇青和、莊文傑、陳明宗 (1996) : 台中港港口海流數值推算,中華民國第十八屆海洋工程研討會論文集,第389-400頁。