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研究生:嚴友君
論文名稱:近期融合族群中的全染色体傳遞不平衡檢定
論文名稱(外文):Chromosome-wide Transmission/Disequilibrium Test in Recently Admixed Populations
指導教授:李文宗李文宗引用關係
學位類別:碩士
校院名稱:國立臺灣大學
系所名稱:流行病學研究所
學門:醫藥衛生學門
學類:公共衛生學類
論文種類:學術論文
論文出版年:2000
畢業學年度:88
語文別:中文
論文頁數:61
中文關鍵詞:genomewide scan
外文關鍵詞:全基因体掃描
相關次數:
  • 被引用被引用:0
  • 點閱點閱:224
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  • 收藏至我的研究室書目清單書目收藏:0
目的:本研究提出一個新的近期融合族群全基因體初步掃描的方法。此法可判斷疾病基因座是否座落於某特定的染色體上。
方法:本研究以來源族群的標記基因頻率差做為係數,整合同一染色體上的各個標記基因座的資訊,進行整合的連鎖檢定。無等稱之為「全染色體傳遞不平衡檢定」。我們並以電腦摸擬方式探討此新檢定在近期融合族群中的統計性質。
結果:結果顯示,在第二代及第三代的近期融合族群中,「全染色體傳遞不平衡檢定」的檢力均較多標記基因座「傳遞不平衡檢定(TDT)」使用Bonferroni法校正為高。即使所引用的來源族群標記基因頻率的先驗資訊不甚正確,新法的檢力仍較高,同時其型Ⅰ誤差並沒有升高。
結論:本研究所提之新法有較高的檢力,使用的資料型式易蒐集,且所需的先驗知識只需大略估計。在適當的近期融合族群中,應可做為研究者全基因體初步掃描時使用的方法。

Objectives: We develop a new method for initial genomewide scan in recently admixed populations. This new method can identify the candidate chromosome that encompasses a disease-susceptibility gene. We refer to this new method as "chromosome-wide transmission/disequilibrium test (TDT-WC)".
Methods: The "TDTWC" performs a simultaneous transmission/disequilibrium test (TDT) for the multiple makers at the same chromosome. This new method obviates the need for multiple-testing correction. The information of these markers was integrated by our a priori knowledge about the differences in the marker allele frequencies between the founding populations. Computer simulation was performed to study the statistical properties of the new method.
Results: The simulation shows that TDTCW is more powerful then conventional multiple-markers TDT with Bonferroni correction both in the second and in the third generations of the admixed population. Even if there are some inaccuracy in our a priori knowledge, the new method is still more powerful and the typeⅠerror is not inflatted.
Conclusions: This new method is powerful and its ascertainment scheme is simple and easy to achieve .The accuracy of the a priori knowledge is not crucial.The TDTCW is a promising alternative for initial genomewide scan in recently admixed populations.

一、 前言 1
二、 資料型態 4
三、 全染色體傳遞不平衡檢定 7
A. 檢定方法 7
B. 係數決定 9
C. 全基因體掃描 14
四、 電腦模擬 15
A. 方法 15
B. 結果 19
五、 討論 23
六、 參考文獻 27
附錄 31

1. Spielman RS, McGinis RE, Ewens WJ (1993) Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent diabetes mellitus (IDDM). Am J Hum Genet 52:506-516
2. Spielman RS, Ewens WJ (1996) The TDT and other family based tests for linkage disequilibrium and association. Am J Hum Genet 59:983-989
3. Schaid DJ (1998) Transmission disequilibrium, family controls, and great expectations. Am J Hum Genet 63:935-941
4. Risch N, Merikangas K (1996) The future of genetic studies of complex diseases. Science 273:1516-1517
5. Risch N, Merikangas K (1997) Genetic analysis of complex disease. Science 275:1329-1330
6. Ott J (1989) Statistical properties of the haplotype relative risk. Genet Epidemiol 6:127-130
7. Xiong M, Guo SW (1998) The power of linkage detection by the transmission/disequilibrium tests. Hum Hered 48:295-312
8. Tu IP, Whittemore AS (1999) Power of association and linkage tests when the disease alleles are unobserved. Am J Hum Genet 64:641-649
9. Camp NJ (1997) Genomewide transmission/disequilibrium testing-consideration of the genotypic relative risks at disease loci. Am J Hum Genet 61:1424-1430
10. Camp NJ (1999) Genomewide transmission/disequilibrium testing: a correction. Am J Hum Genet 64:1485-1487
11. McKeigue PM (1997) Mapping genes underlying ethnic differences in disease risk by linkage disequilibrium in recently admixed populations. Am J Hum Genet 60:188-196
12. Kaplan NL, Martin ER, Morris RW, Weir BS (1998) Marker selection for the transmission/disequilibrium test, in recently admixed populations. Am J Hum Genet 62:703-712
13. Stephens JC, Briscoe D, O`Brien SJ (1994) Mapping by admixture linkage disequilibrium in human populations: limits and guidelines. Am J Hum Genet 55:809-824
14. Para EJ, Marcini A, Akey J, Martinson J, Batzer MA, Cooper R, Forrester T, et al (1998) Estimating African American admixture proportions by use of population specific alleles. Am J Hum Genet 63:1839-1851
15. Lautenberger JA, Stephens JC, O`Brien SJ, Smith MW (2000) Significant admixture linkage disequilibrium across 30 cM around the FY locus in African Americans. Am J Hum Genet 66:969-978
16. Ewens WJ, Spielman RS (1995) The transmission/disequilibrium test: history, subdivision, and admixture. Am J Hum Genet 57: 455-464
17. Pericak-Vance MA (1998) Linkage disequilibrium and allelic association. In Haines JL, Pericak-Vance MA (eds): "Approaches to gene mapping in complex human diseases." New York, Wiley-Liss Inc, pp 323-333
18. Witte JS, Elston RC, Cardon LR (2000) On the relative sample size required for multiple comparisons. Stat in Med 19:369-372
19. Schaid DJ, Sommer SS (1994) Comparison of statistics for candidate-gene association studies using cases and parents. Am J Hum Genet 55:402-409
20. Risch N, Spiker D, Lotspeich L, et al (1999) A genomic screen of autism: evidence for a multilocus etiology. Am J Hum Genet 65:493-507
21. Szatmari P, Jones MB, Zwaigenbaum L, MacLean JE (1998) Genetics of autism: overview and new directions. J Autism Develop Disor 28:351-368
22. Rutter M, Silberg J, O`Connor T, Simonoff E (1999) Genetics and child psychiatry: Ⅱ empirical research findings. J Child Psychol Psychiat 40: 19-55

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