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研究生:林錦泉
研究生(外文):Ching-Chuan Lin
論文名稱:草菇甲型去氧核醣核酸之純化及酵素性質研究
論文名稱(外文):Purification and Characterization of mushroom DNase I
指導教授:廖大修
指導教授(外文):Ta-Hsiu Liao
學位類別:碩士
校院名稱:國立臺灣大學
系所名稱:生化學研究所
學門:醫藥衛生學門
學類:醫學學類
論文種類:學術論文
論文出版年:2001
畢業學年度:89
語文別:中文
論文頁數:118
中文關鍵詞:去氧核醣核酸草菇胰蛋白水解硫酸銨
外文關鍵詞:DNase Imushroom (Volvariella volvacea)trypsinammonium sulfate
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草菇粗抽液在80 %硫酸銨存在下,於4 oC下攪拌48小時後,所沈澱下來之DNase I活性可以增加至4倍。經過40 %硫酸銨回溶回收,通過Phenyl Sepharose、Sephadex G-100、Hydroxyapatite及Superose 12等四種管柱層析分離法將所要的蛋白純化,從SDS-PAGE上可看到分子量為66 kDa的單一蛋白色帶,證明此一蛋白已達均質化(homogeneous)。而利用分子篩濾法(gel filtration)可計算出其分子量約為71 kDa。從等電點焦集電泳法(IEF)得到草菇DNase I的等電點為4.56,且無同功存在。此外,草菇DNase I無法吸附在Con A管柱上,可知其不是醣蛋白。
純化後的草菇DNase I經轉染至PVDF膜上,經N端定序得知其N端被修飾而無法讀出訊號。而純化後的草菇DNase I經Sephadex G-25管柱去離子化後,發現蛋白被降解成分子量30 kDa及28 kDa的主要片段,其N端分別為TRVKGA及QLPPINSPKSNL。另外利用胰蛋白水解(trypsin)水解草菇DNase I,可得到一分子量為27 kDa的片段,其N端為YYQLPPINSPKSNLFIILNY。去離子化的草菇DNase I在室溫下48小時候,其活性完全喪失,然而在1.0 M硫酸銨或5 mM PMSF存在下,草菇DNase I仍然可以保持70%及40 %的活性。由加熱的實驗顯示不論在硫酸銨存在與否,草菇DNase I的Tm值皆為55 oC。由以上的實驗可知在高離子濃度時,蛋白水解的活性被抑制,因此草菇DNase I在1.0 M硫酸銨存在下較為穩定。
草菇DNase I活性最適pH值為7.0,此和牛胰臟DNase I相同,但只有Ca2+存在時,草菇DNase I亦有活性,此與牛胰臟DNase I不同。此外,草菇DNase I在Mg2+ 或Ca2+單一存在時,就具有一次水解DNA兩股的能力。而牛胰臟DNase I在Mg2+單一存在時,只能一次水解DNA的單股,而在Mg2+ 及Ca2+同時存在時,才具有一次水解DNA兩股的能力。
在未來除了對草菇DNase I做其功能及生化上的研究外,我們希望可以得到草菇DNase I的cDNA序列,並和其他物種做比較。

The DNase I activity was raised about 4-fold when the crude extract of mushroom (Volvariella volvacea) was left in 80% ammonium sulfate at 4 oC for 48 hours. The DNase I was then purified from the (NH4)2SO4 precipitate by chromatography on the Phenyl Sepharose, Sephadex G-100, hydroxyapatite and Superose 12 columns. The purified enzyme was homogeneous as evidenced by SDS-PAGE with Mr = 66 kDa and by gel filtration on Superose 12 with Mr = 71 kDa. By isoelectric focusing on thin-layer polyacrylamide gel, the enzyme exhibited a single band with an acidic pI value of 4.56. The mushroom DNase I is not a glycoprotein because it can not be bound to Con A Sepharose.
After SDS-PAGE, mushroom DNase I was blotted to a PVDF membrane and subjected to protein sequencing, the results showed that the N-terminus was blocked. When the purified enzyme was desalted on Sephadex G-25 column, it was gradually degraded to yield two major fragments, 30 kDa and 28 kDa. The protein sequencing showed that the N-termini of these two fragments were TRVKGA and QLPPINSPKSNL, respectively. The N-terminus of a fragment of the trypsin digested mushroom DNase I was YYQLPPINSPKSNLFIILNY. The activity of the desalted mushroom DNase I was completely lost after 60 hours at room temperature, but the enzyme with 1.0 M (NH4)2SO4 or 5 mM PMSF still kept 70% and 40% activity respectively under the same condition. The heat experiment showed that with and without ammonium sulfate, the inactivation melting temperature of mushroom DNase I was 55 oC. The experiments indicated that mushroom DNase I was stable in the presence of 1.0 M (NH4)2SO4, because the protease activities were inhibited under the high salt condition.
Mushroom DNase I had an optimal pH = 7.0, but unlike mammalian DNase I, it was active with Ca2+ alone. On the other hand, mushroom DNase I introduces double strand cutting in the presence of either Mg2+ or Ca2+. Bovine DNase I, on the other hand, introduces only single strand nicks in the presence of Mg2+, while with Mg2+ plus Ca2+ can bovine DNase I introduce double strand cutting.
In the future, we will sequence the cDNA of mushroom DNase I and compare the differences among species and relate them to biochemical functions.

目 錄
中文摘要………………………………………1
英文摘要………………………………………3
壹、縮寫……………………………….............5
貳、緒論………………………………………7
參、實驗材料與儀器.……………………….14
肆、實驗方法……………………………… 17
伍、結果…………………………………….49
陸、討論…………………………………….58
柒、圖表……………………………………..71
捌、參考文獻……………………………….103
玖、附錄…………………………………….110

Beynon, R.J. and Bond, J. S. (1989) in Proteolytic enzymes a practical approach, 1st edn, pp105-123, Oxford University Press, Oxford, NY.
Campbell, V. M. and Jackson, D. A. (1980) The effect of divalent cations on the mode of action of DNase I. J. Biol. Chem. 255, 3726-3735.
Chang, Y. M., Lin, S. and Liao, T. H. (1994) Bovine pancreatic deoxyribonuclease F: isoelectric focusing, peptide mapping. Biotechnol. Appl. Biochem. 19, 129-140.
Chomczynski, P. and Sacchi, N. (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate- phenol-chloroform extraction. Anal. Biochem. 162, 156-159.
Davis, M. M., Kim, S. K. and Hood, L. E. (1980) DNA sequences mediating class switching in alpha-Immunoglobins. Science 209, 1360-1365.
DeDuve, C., and Wattiaux, R. (1996) Functions of lysosomes. Annu. Rev. Physiol. 28, 435-492.
Douvas, A. and Price P. A. (1975) Some effects of calcium and magnesium ions on the activity of bovine pancreatic
deoxyribonuclease A. Biochim. Biophys. Acta. 395, 201-212.
Drew, H. R. and Travers, A. A. (1984) DNA structural variations in the E. coli. Tyr T promoter. Cell 37, 491-502.
Enari M, Sakahira H, Yokoyama H, Okawa K, Iwamatsu A, Nagata S. (1998) A caspase-activated DNase that degrades DNA during apoptosis, and its inhibitor ICAD. Nature 39, 43-50
Fraser, M. J. and Low, R. L. (1993) Fungal and mitochondrial nuclease. Nuclease, 2nd edn, pp171-207.
Helene, J. S. and Alain, J. S. (1984). Effect of proteolysis on the yeast mitochondrial deoxyribonuclease. Biochem. Biophys. Acta. 246, 7191-7200.
Ho, H. C. and Liao, T. H. (1999) Protein structure and gene cloning of Syncephalastrum racemosum nuclease. Biochem. J. 339, 216-267.
Hori, K., Baba, M., and Moryia, T. J. (1983) Deoxyribonuclease A of chicke embryo. J. Biol. Chem. 258, 960-966.
Hsiao, Y. M., Ho, H. C., Wang, W. Y. Tam, M. F., and Liao, T. H. (1997) Purification and characterization of tilapia (Oreochromis mossambicus) deoxyribonuclease I. Primary structure and cDNA sequence. Eur. J. Biochem. 249, 786-791.
Kayalar, C., Ord, T., Testa, M. P., Zhong, L. T., and Bredesen, D. E. (1996) Cleavge of actin by interleukin 1β-converting enzyme to reverse DNase I inhibition. Proc. Natl. Acad. Sci. USA 93, 2234-2238.
Kim, H. S. and Liao, T. H. (1982) Isoelectric focusing of multiple forms of DNase in thin layers of polyacrylamide gel and detection of the enzymatic activity with a zymogram method following separation. Anal. Biochem. 119, 96-101.
Lacks, S. A., Springhorn, S. S. and Rosenthal, A. L. (1979) Effect of the composition of sodium dodecyl sulfate preparations on the renaturation of enzymes after polyacrylamide gel electro- phoresis. Anal. Biochem. 100, 357-563.
Lacks, S. A. (1981) Deoxyribonuclease I in mammalian tissues specificity of inhibition by actin. J. Biol. Chem. 256, 2644-2648.
Laskowski, M. (1961) In The Enzyme (Boyer, P.D. ed) 3rd ed., Vol. 4, 238-311, Academic Press, New York.
Lazarides, E. and Lindberg, U. (1974) Actin is naturally occurring inhibitor of deoxyribonuclease I. Proc. Natl. Acad. Sci. USA. 71. 4742-4746.
Liao, T. H., Salnikow, J., Moore, S. and Stein, W. H. (1973) Bovine pancreatic deoxyribonuclease A. J. Biol. Chem. 248, 1489 -1495.
Liao, T. H. (1974) Bovine pancreatic deoxyribonuclease D. J. Biol. Chem. 249, 2354-2356.
Liao, T. H. (1977) Isolation and characterizaton of multiple forms of malt deoxyribonuclease. Phytochemistry 16, 1469-1474.
Lin, S. F., Lin, S. W., Hsu, T. Y., Liu, M. Y., Chen, J. Y. and Yang, C. S. (1994) Functional analysis of the amino acid terminus of Epstein-Barr virus deoxyribonuclease. Virology 199, 223-227.
Lindberg, U. (1967) Molecular weight and amino acid composition of deoxyribonuclease I. Biochemistry 6, 335-342.
Lomonossoff, G. P., Butler, P. J. G., and Klug, A. (1981) Sequence-dependent structural variation in the conformation of DNA. J. Mol. Biol. 149, 745-760
Los, M., Neubuser, D., Coy, J.F., Mozoluk, M., Poustka, A. and Schulze-Osthoff, K. (2000) Functional caracterization of
DNase X, a novel endonuclease expressed in muscle cells. Biochemistry, 39, 7365-7373.
Love, J. D. and Hewitt, R. R. (1979) The relationship between human serum and human pancreatic DNase I. J. Biol. Chem. 254, 12588-12594.
Lundblad, R. L. (1977) Purification and partial characterization of deoxyribonuclease I from bovine parotid glad. J. Dent. Res. 56, 320-326.
McIlroy, D., Tanaka, M., Sakahira, H., Fukuyama, H., Suzuki, M., Yamamura, K. -I., Ohsawa, Y., Uchiyama, Y. and Nagata, S. (2000) An auxiliary mode of apoptotic DNA fragmentation provided by phagocytes. Gene. Dev. 14, 549-558.
Merri, C. R. (1980) Ultrasensitive stain for proteins in polyacryl - amide gels shows regional varivation in celebrospinal fluid proteins. Science 211, 1437-1438.
Mosbaugh, D. W. and Linn, S. (1983) Excision repair and DNA synthesis with a combination of Hela DNA polymerase beta and DNase V. J. Biol. Chem. 258, 108-118.
Murai, K., Yamanaka, M. and Omae, T. (1978). Purification and properties of deoxyribonuclease from human urine. Biochem. Biophys. Acta. 517, 186-194.
Nishimura, C., Uversky, V. N. and Fink, A. L. (2001) Effect of salts on the stability and folding of Staphylococcal nuclease. Biochemistry 40, 2113-2128.
Oberhammer, F., Wilson, J. W., Dive, C., Morris, I. D., Hickman, J. A., Wakeling, A. E., Walker, P. R. and Sikorska, M. (1993) Apoptotic death in epithelial cells: cleavage of DNA to 300 and/or 50 kb fragments prior to or in absence of internucleosomal fragment. EMBO. J. 12, 3679-3684.
Oefner, C. and Suck, D. (1986) Crystallographic refinement and structure of DNase at 2A resolution. J. Mol. Biol. 192, 605-
632.
Oliveri, M., Daga, A., Cantoni, C., Lunardi, C., Millo, R. and Puccetti A. (2001) DNase I mediates internucleosomal DNA degradation in human cells undergoing drug-introduced apoptosis. Eur. J. Immuno. 31, 743-751.
Paudel, H. K. and Liao, T. H. (1986) Comparison of the three primary structures of deoxyribonuclease isolayed from bovine,
ovine and porcine pancreas. J. Biol. Chem. 261, 16012-16017.
Peitsch, M. C., Polzar, B., Stephan, H., Crompton, T., MacDonald, H. R., Mannherz, H. G. and Tschopp, J. (1993) of the Characterization endogenous deoxyribonuclease I involved nuclear DNA degradation during apoptosis (programmed cell death). EMBO. J. 12, 371-377.
Plapp, B. V., Moore, S. and Stein, W. H. (1971) Activity of bovine pancreatic deoxyribonuclease A with modified amino group. J. Biol. Chem. 246, 939-945.
Polzar, B., Peitsch, M. C., Loos, R., Tschopp, J. and Mannherz, H.G. (1993) Overexpression of deoxyribonuclease I (DNase I)
transfected into COS-cells : its distribution during apoptotic cell death. Eur. J. Cell. Biol. 62, 397-405.
Price, P. A., Stein, W. H. and Moore, S. ( 1969 ) Effect of divalent cations on the reduction and reformation of the disulfide bonds of deoxyribonuclease. J. Biol. Chem. 244, 929-932.
Price, P. A. (1975) The essential role Ca2+ in the activity of bovine pancreatic deoxyribonuclease. J. Biol. Chem. 250, 1981-1986.
Raymond, S. and Weintraub, L. (1959) Acrylamide gel as a supporting medium for zone electrophoresis. Science 130, 711.
Salnikow, J. and Murphy, D. (1973) Bovine pancreatic deoxyribonuclease A and C. J. Biol. Chem. 248, 1499-1501.
Suck, D., Lahm, A. and Oefner, C. (1988) Structure refined to 2 A of a nicked DNA octanucleotide complex with DNase I. Nature. 332, 464-468.
Tullis, R. and Price, P. A. (1974) The effect of calcium and magnesium on the ultraviolet spectrum of bovine pancreatic deoxyribonuclease A* . J. Biol. Chem. 249,5033-5037.
Weston, S.A., Lahm, A. and Suck, D. (1992) X-ray structure of the DNase I-d(GGTATACC)2 complex at 2.3 A resolution. J. Mol. Biol. 226, 1237-1256.
Widlak P, Li P, Wang X, Garrard WT. (2000) Cleavage preferences of the apoptotic endonuclease DFF40 (caspase-activated DNase or nuclease) on naked DNA and chromatin substrates. J. Biol. Chem. 275, 8226-32
Widlak, P. and Garrard, W. T. (2001) Ionic and cofactor requirements for the activity of the apoptotic endonuclease DFF 40/CAD. Mol. Cell. Biochem. 218, 125-130.
Wiberg, J. S. ( 1958 ) On the mechanism of metal activation of deoxyribonuclease I. Arch. Biochem. Biophys. 73, 337-358.
Wu, Y. C. Stanfield, G. M. and Horvitz, H. R. (2000) NUC-1, a Caenorhabditis elegans DNase II homolog, functions in an intermediate step of DNA degradation during apoptosis. Gene. Dev. 14, 536-548.
陳靜瑩 (1993) 有絲真菌去氧核糖核酸水解之蛋白結構及生合成之研究 國立台灣大學醫學院 生化學研究所碩士論 文
陳凌雲 (1989) 有絲真菌去氧核糖核酸水解之純化以及分子構造與其化學修飾之研究國立台灣大學醫學院 生化 學研究所碩士論文
張樹庭 (1975) 草菇 五洲出版社出版

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