參考文獻
石心怡。2002。鼠傷寒沙門氏菌之致病相關基因、表型特性及其與李斯特菌之免疫磁珠-PCR檢測。國立中興大學食品科學研究所博士論文。謝尤敏。2001。台灣地區引起食品中毒之仙人掌桿菌其毒素圖譜，PCR檢測與分子分類之研究。國立中興大學食品科學研究所博士論文。龐仁傑。2000。仙人掌桿菌與蘇力菌毒性之檢測以及蘇力菌殺蟲活性試驗。國立中興大學食品科學研究所碩士論文。許淑真。1999。大腸桿菌與志賀氏菌malate dehydrogenae基因部分序列比對及PCR引子組之設計與應用。國立中興大學食品科學研究所碩士論文。蕭明晃。1999。以PCR技術鑑別金黃色葡萄球菌腸毒素C1、C2、C3型及腸毒素G、H、I型特異性引子組之發展。國立中興大學食品科學研究所碩士論文。陳健尉。1997。基因微陣列顯色分析系統之開發暨其於癌症研究上之應用。國防醫學院生命科學研究所博士論文。Adam, A. 1923. Uber die Biologie der dyspepsie coli und ihre Bezienhung zur pathogenese der dyspepsie and intoxication. Journal Bacteriology. Kinerheik. Berlin 3. F. LI, 295-314. (Abs.)
Agata, N., M. Ohta, M. Mori, and M. Isobe. 1995b. A novel dodecadepsipeptide, cereulide, is an emetic toxin of Bacillus cereus. FEMS Microbiol. Lett. 129:17-20.
Alwine, J. C., Kemp, D. J., Stark, G. R., 1977. Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes. Proc. Natl. Acad. Sci. USA 74, 5350—5354.
Amann, R. I., Ludwig, W. and Schleifer, K. H. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59: 143-169
Amavisit, P., Browning, G. F., Lightfoot, D., Church, S., Andersn, G. A., Whithear, K. G. and Markham, P. F. 2001. Rapid PCR detection of Salmonella in horse fecal samples. Vet. Microbiol. 79(1): 63-74
Andersen, G. L., Simchock, J. M. and Wilson, K. H. 1996. Identification of a region of genetic variability among Bacillus anthracis strains and related species. J. Bacteriol. 178:377-384.
Ang, S., Lee, C. Z., Peck, K., Sindici, M., Martrubutham, U., Gleeson, M. A. and Wang, J. T. 2001. Acid-induced gene expression in Heliobacter pylori study in genomic scale by microarray. Infect. Immun. 69: 1679-1686
Anonymous. 1999. Outbreak of Vibrio parahaemolyticus infection associated with eating raw oysters and clams harvested from Long Island Sound-Connecticut, New Jersey, and New York, 1998. JAMA. 281: 603-604
Anthony, R. M., Brown, T. J. and French, G. L. 2000. Rapid Diagnosis of Bacteremia by Universal Amplification of 23S Ribosomal DNA Followed by Hybridization to an Oligonucleotide Array. Journal of clinical microbiology. 38(2): 781~788.
Arcangioli, M. A., Leroy S. S., Martel, J. L. and Chaslus, D. E. 2000. Evolution of chloramphenicol resistance, with emergence of cross-resistance to florfenicol, in bovine Salmonella typhimurium strains implicates definitive phage type (DT) 104. J. Med. Microbiol. 49:103-110.
Asano,S. I., Nukumizu, Y. Bando, H. Hzuka, T. and Yamamoto, T. 1997. Cloning of novel enterotoxin genes from Bacillus cereus and Bacillus thuringiensis. Appl. Environ. Microbiol. 63 : 1054-1057.
Ash, C. and Collins, M. D. 1992. Comparative analysis of 23S ribosomal RNA gene sequences of Bacillus anthracis and emetic Bacillus cereus determined by PCR-detect sequencing. FEMS Microiol. Lett. 94 : 75-80.
Ash, C., Farrow, J. A. E. Dorsch, M. Stackebrandt, E. and Collins, M. D. 1991. Comparative analysis of Bacillus anthracis , Bacillus cereus , and related species on the basis of reverse transcriptase sequencing of 16S rRNA. Int. J. Syst. Bacteriol. 41 : 343-346.
Baba, K., Shirai, H., Terai, A., Kumagai, K., Takeda, Y. and Nishibuchi, M.1991. Similarity of the tdh gene-bearing plasmids of Vibrio cholerae non-O1 and Vibrio parahaemolyticus. Microb. Path. 10:61-70
Balaban, N. and Rasooly, A. 2000. Staphylococcal enterotoxins. Int J Food Microbio.61: 1-10
Banerjee, S. K., Pandian, S., Todd, E. C. and Farber, J. M. 2002. A rapid and improved method for the detection of Vibrio parahaemolyticus and Vibrio vulnificus strains grown on hydrophobic grid membrane filters. J Food Prot Jun; 65(6):1049-53
Baumler, A. J., Hargis, B.M. and Tsolis, R.M. 2000. Tracing the origins of Salmonella outbreaks. Science. 287: 50-52
Bause, H. J., Denner, E. B. and Lubitz, W. 1996. Classification and identification of bacteria: current approaches to an old problem. Overview of methods used in bacterial systematics. J.Biotechnol. 47: 3-38
Bean, N. H. and Griffin, P. M. 1990. Foodborne disease outbreaks in the United States, 1973-1987. J. Food. Prot.35: 804-817
Bean, N. H., Griffin, P. M., Goulding, J. S. and Ivey, C. B. 1990. Foodborne disease outbreaks, 5-year summary, 1983-1987. Morb. Mortal Wkly. Rep. CDC Surveill. Summ. 39: 15-57
Beecher, D. J. and Wong, A. C. L. 1997. Tripartite hemolysin BL from Bacillus cereus. J. Biol. Chem. 272 : 233-239.
Beecher, D. J., Schoeni, J. L. and Wong, A. C. L. 1995. Enterotoxic activity of Hemolysin BL from Bacillus cereus. Infect. Immun. 63:4423-4428.
Bej, A. K., DiCesare, J. L., Haff, L. and Atlas, R. M. 1991. Detection of Escherichia coli and Shigella spp. in water by using the polymerase chain reaction and gene probes for uid. Appl. Environ. Microbiol. 57:1013-1017.
Bej, A. K., Mahbubani, M. H., Boyce, M. J. and Atlas, R. M. 1994. Detection of Salmonella spp. in oysters by PCR. Appl. Environ. Microbiol. 60:368-373.
Bej, A. K., Patterson, D. P., Brasher, C. W., Vickery, M. C., Jones, D. D. and Kaysner, C. A. 1999. Detection of total and hemolysin-producing Vibrio parahaemolyticus in shellfish using multiplex PCR amplification of tl, tdh and trh. J. Microbiol. Methods. 36(3): 215-225
Bej, A. K., Steffan, R. J., Dicesare, J., Haff, L. and Atlas, R. M. 1990. Detection of coliform bacteria in water by polymerase chain reaction and gene probes. Appl. Environ. Microbiol. 56, 307-314.
Berdoll, M. S., Borja, C. R. and Avena, R. M. 1965. Identification of a new enterotoxin as enterotoxin C. J. Bacteriaol. 90: 1481-1485
Betley, M. J. and Harris, T. O. 1992. Staphylococcal enterotoxins: genetic characterization and relationship between structure and emetic activity. J. Food. Microbiol. 11: 109-121
Betley, M. J., Borst, D. W. and Regassa, L. B. 1992. Staphylococcal enterotoxins, toxic shock syndrome toxin and streptococcal pyrogenic exotoxins: a comparative study of their molecular biology. Chem. Immunol. 55: 1-35
Bettelheim, K. A. 2001. Development of a rapid method for the detection of verocytotoxin-producing Escherichia coli (VTEC). Lett Appl Microbiol. 33(1): 31-5
Borin, S., Daffonchio, D. and Sorlini, C. 1997. Single strand conformation polymorphism analysis of PCR-tDNA fingerprinting to address the identification of Bacillus species. FEMS Microbiol. Lett. 157: 87-93.
Brasher, C. W., Depaola, A., Jones, D. D. and Bej, A. K. 1998. Detection of microbial pathogens in shellfish with multiplex PCR. Curr. Microbiol. 37:101-107.
Brenner, F. W., Villar, R. G., Aangulo, F. J., Tauxe, R. and Swaminathan B. 2000. Salmonella nomenclature. J. Clin. Mircobiol. 38:2465-2467.
Brown, P.O. and Botstein, D. 1999. Exploring the new world of genome with DNA microarrays. Suppl. Nat. Genet. 21: 33-37
Brown, T. J. and Anthony, R. M. 2000. The additions of low numbers of 3’ thymine bases can be used improve the hybridization signal of oligonucleotides for use within arrays on nylon supports. Journal of Microbiological Methods. 42: 203-207
Bunning, V. K., Lindsay, J. A. and Archer, D. 1997. Chronic health effects of microbial Foodborne disease. World health Stat Q. 50: 51-56
Busse, H. J., Denner, E. B. M., Lubitz, W. 1996. Classification and identification of bacteria: current approaches to an old problem. Overview of methods used in bacterial systematics. J. Biotechmol. 47: 3-38
Call, D. R., Brockman, F. J. and Chandler, D. P. 2001. Detection and genotyping Escherichia coli O157:H7 using multiplex PCR and nucleic acid microarrays. 67: 71-80
Campbell, G. R., Prosser, J., Glover, A. and Killham, K. 2001. Detection of Escherichia coli O157:H7 in soil and water using multiplex PCR. 91(6): 1004-1010
Carli, K. T., Unal, C. B., Caner, V. and Eyigor, A. 2001. Detection of Salmonellae in chicken feces by a combination of tetrathionate broth enrichment, capillary PCR, and capillary gel electrophoresis. J Clin Microbiol. 39(5): 1871-1876
Carlson, C. R., Caugant, D. A. and Kolstø, A. B. 1994. Genotypic diversity among Bacillus cereus and Bacillus thuringiensis strains. Appl. Environ. Microbiol. 60 : 1719-1725.
Carlson, S. A., Bolton, L. F., Briggs, C. E., Hurd, H. S., Sharma, V. K., Fedorka, C. P. J. and Jones, B. D. 1999. Detection of multiresistant Salmonella typhimurium DT104 using multiplex and fluorogenic PCR. Mol. Cell Probes. 13:213-222.
Cha, J. J., Srivastava, R., Vakharia, V. V., Rao, G. and Bentley, W. E. 1999. Green fluorescent protein as a noninvasive stress probe in resting Escherichia coli cells. Appl. Environ. Microbiol. 65: 409-414
Chamberlain, J. S., Gibbs, R. A., Ranier, J. E., Nguyen, P. N. and Caskey, C. T. 1988. Deletion screening of the Duchenne muscular dystrophy locus via multiplex DNA amplification. Nucleic Acids Res. 16:11141-11156.
Chan, S. W., Wilson, S. G., Vera-Garcia, M., Whippie, K., Ottaviani, M., Whilby, A., Shah, A., Johnson, A., Mozola, M. A. and Halbert, D. N. 1990. Comparative study of colorimetric DNA hybridization method and conventional culture procedure for detection of Salmonella in foods. J. Assoc. Off. Anal. Chem. 73, 419-424.
Chen, C. H., Ding, H. C. and Chang, T. C. 2001. Rapid identification of Bacillus cereus based on the detection of a 28.5-kilodalton cell surface antigen. J. Food. Prot. 64(3): 348-354
Chen, H. C. and Chang, T. C. 1996. Rapid detection of Vibrio parahaemolyticus in oysters by immunofluorescence microscopy. Int J Food Microbiol. 29(2-3): 311-319
Chen, J. W., Wu, R., Yang, P. C., Huang, J. Y., Sher, Y. P., Han, M. H., Kao, W. C., Lee, P. J., Chiu, T. F., Chang, F., Chu, Y. W., Wu, C. W. and Peck, K. 1998. Profiling expression patterns and isolating differentially expressed genes by cDNA Microarray system with colorimetry detection. Genomics. 51: 312-324
Chhotray, G. P., Pal, B. B., Khuntia, H. K., Chowdhury, N. R., Chakraborty, S., Yamasaki, S., Ramamurthy, T., Takeda, Y., Bhattacharya, S. K. and Nair, G. B. 2002. Incidence and molecular analysis of Vibrio cholerae associated with cholera outbreak subsequent to the super cyclone in Orissa, India. Epidemol Infect. 128(2): 131-138
Chiou. A., Chen, L.H. and Chen, S.K. 1991. Foodborne illness in Taiwan, 1987-1989. Food Australia. 43: 70-71
Chiou, C.H., Hsu, S.Y., Chiu, S.I., Wang, T.K. and Chao, C.S. 2000. Vibrio parahaemolyticus serovar O3: K6 as cause of unusually high incidence of food-borne disease outbreaks in Taiwan from 1996 to 1999. J. Clin. Microbiol. 38: 4621-4625
Chow, K. H., Ng, T. K., Yuen, K.Y. and Yam, W. C. 2001. Detection of RTX toxin gene in Vibrio cholerae by PCR. J. Clin. Microbial. 39(7): 2594-2597
Clayton, R. A., Sutton, G., Hinkle, P. S., Bult, J. C. and Fields, C. 1995. Intraspecific variation in small-subunit rRNA sequences in GenBank: why single sequences may not adequately represent prokaryotic taxa. Int J Syst Bacteriol. 45: 595-599
Clia, V., Lasay, B. and Christen, R. 1996. Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on Phylogenetic analyses at the species level. Mol biol Evol. 13: 451-461
Coleman, D. J., Chick, K. E. and Nye, K. J. 1995. An evaluation of immunomagnetic separation of the detection of salmonellas in raw chicken carcasses. Lett. Appl. Microbiol. 21:152-154.
Cudjoe, K. S., Krona, R. and Olsen, E. 1994. IMS: a new selective enrichment technique for detection of Salmonella in foods. Int. J. Food Microbiol. 23:159-165.
Curiale, M. S., Klatt, M. J. and Mozola, M. A. 1990. Colorimetric deoxyribonucleic acid hybridization assay for rapid screening of Salmonella in foods: Colaborative study. J. Assoc. Off. Anal. Chem. 73, 248-256.
Daly, P., Collier, T. and Doyle, S. 2002. PCR-ELISA detection of Escherichia coli in milk. Lett. Appl. Microbiol. 34(3): 222-226
Day, T. L., Tatani, S. R. Notermans, S. and Bennett, R. W. 1994. A comparison of ELISA and RPLA for detection of Bacillus cereus diarrhoeal enterotoxin. J. Appl. Bacteriol. 77:9-13.
DeParasis, J. and Roth, D. A. 1990. Nucleic acid probes for identification of phytobacteria: identification of genus-specific 16S rRNA sequences. Phytopathology 80:618—621.
DeRisi, J., Penland, L., Brown, P. O., Bittner, M. L., Meltzer, P. S., Ray, M., Chen, Y., Su, Y. A. and Trent, J. M. 1996. Use of a cDNA microarray to analyze gene expression patterns in human cancer. Nature Genet. 14: 457-460
DeRisi, J. L., Iyer, V. R. and Brown, P. O. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 278: 680-686
Dmitry, Y. G., Bruce, K. M., Dmitrii, P., David, A. S., Bruce, E. R. and Andrei, D. M. 1997. Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology. Appl Environ Microbiol. 63: 2397-24002
Doyle, M. P. and Schoeni, J. L. 1989. Isolation of Escherichia coli O157:H7 from retain fresh meats and poultry. Appl. Environ. Microbiol. 53, 2394-2396.
Drobniewski, F. A. 1993. Bacillus cereus and related species. Clin. Microbiol. Rev. 6:324-338.
Echeverria, P., Serichantalergs, O., Changchawalit, S., Baudry, B., Levine, M. M., Orskov, F. and Orskov, I. 1992. Tissue culture-adherent Escherichia coli in infantile diarrhea. J. Infect. Diseases. 165, 141-143.
Echeverria, P., Seriwatana, J., Sethabutr, O. and Chatkaeomorakot, A. 1990. Detection of diarrheogenic Escherichia coli using nucleotide probes. In: Gene Probe for Bacteria, Macario, A. J. L. et al. (eds.), 1st. Ch. 4 pp. 95-141, Academic Press, Inc. CA. USA.
Edwards, M. C. and Gibbs, R. A. 1995. Multiplex PCR, p.157-171. In C. W. Dieffenbach and Dveksler, G. S. (ed.), PCR primer a laboratory manual, CSHL Press, Plainview, New York.
Ekstdet, R. D. and Yotis, W. W. 1960. Studies on staphylococci(Ⅱ). Effect of coagulase on the virulence of coagulase-negative strains. J. Bacteriol. 80: 496-500
Elder, R. O., Duhamel, G. E., Mathiesen, M. R., Erickson, E. D., Gebhart, C. J. and Oberst, R. D. 1997. Multiplex polymerase chain reaction for simultaneous detection of Lawsonia intracellularis, Serpulina hyodysenteriae, and salmonellae in porcine intestinal specimens. J. Veter. Dis. Invest. 9:281-286.
Elder, R. O., Keen, J. E., Siragusa, G. R., Barkocy-Gallager, G. A., Koohmarie, M. and Laegreid, W. W. 2000. Correlation of enterohemorrgahic Escherichia coli O157 prevalence in feces, hides, and carcasses of beef cattle during processing. Proc, Natl. Acad. Sci. 97: 2999-3003
Erol, I., Kleer, J., Hildebrandt, G. and Yurtyeri, A. 1999. Coupling of immunomagnetic separation and polymerase chain reaction for the rapid detection of salmonellae in minced meat and chicken giblets. Berl. Munch. Tierarztl. Wochenschr. 112:100-103.
Escherich, T. 1885. Die darmbkterien des neugeborenen und sauglings. Fortschr. Med., Berlin 1885 III, 231-236. (Abs.)
Eslava, C., Villaseca, J., Morales, R., Navarro, A. and Cravioto, A. 1993. Identification of a protein with toxigenic activity produced by enteroaggregative Escherichia coli, abstr. B-105, p. 44. In Abstracts of the 93rd General Meeting of the American Society for Microbiology 1993. American Society for Microbiology, Washington, D. C.
Eyigor, A., Carli, K. T. and Unal, C. B. 2002. Implementation of real-time PCR to tetrathionate broth enrichment step of Salmonella detection in poultry. Lett Appl Microbiol. 34(1): 37-41
Favrin, S. J., Jassim, S. A. and Griffiths, M. W. 2001. Development and optimization of a novel Immunomagnetic separation-bacteriophage assay for detection of Salmonella enterica serovar enteritidis in broth. Appl. Environ. Microbiol. 67(1): 217-224
Fawcett, P., Eichenberger, P., Losick, R., Youngman, P., 2000. The transcriptional profile of early to middle sporulation in Bacillus subtilis. Proc. Natl. Acad. Sci. U. S. A. 97, 8063—8068.
Ferea, T. L. and Brown, P. O. 1999. Observing the living genome. Curr. Opin. Genet. Dev. 9: 715-722
Fermanian, C., Laperyre, C., Fremy, J. M. and Claisse, M. 1996. Production of diarrheal toxin by selected strains of Bacillus cereus. Int. J. Food Microbiol. 30: 345-358.
Fields, C., Adams, M. D., White, O. and Venter, J. C. 1994. How many genes in the human genome? Nature Genet. 7: 345-346
Fitts, R., Diamond, M., Hamilton, C. and Neri, M. 1983. DNA-DNA hybridization assay for detection of Salmonella spp. in foods. Appl. Environ. Microbiol. 46, 1146-1151.
Fluit, A. C., Widjojoatmodjo, M. N., Box, A. A., Torensma, R. and Verhoef, J. 1995. Rapid detection of Salmonellae in poultry with the magnetic immuno-polymerase chain reaction assay. Appl. Environ. Microbiol. 59:1342-1346.
Fodor, S. P. A. 1997. Massively parallel genomics. Science. 277: 393-395
Food and Drug Administration 1995. Bacteriological Analytical Manual, 8th edn. Arlington, VA, USA: Association Official Analytical Chemists.
Fox, G. E., Wisotzkey, J. D. and Jurtshuk, P. Jr. 1992. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42:166—170.
Fratimico, P. M., Schultz, F. J. and Buchanan, R. L. 1992. Rapid isolation of Escherichia coli O157:H7 from enrichment cultures of foods using an immunomagnetic separation method. Food Microbiol. 9:105-113.
Fricker, E. J. and Fricker, C. R. 1994. Application of the polymerase chain reaction to the identification of Escherichia coli and coliforms in water. Lett. Appl. Microbiol. 19: 44-46.
Fung, C. P., Ho, M. W., Wang, F. D., Tsai, K., Liu, C. E., Liu, C. Y. and Siu, L. K. 2001. Investigation of an outbreak caused by methicillin-resistant Staphylococcus aureus in a cardiovascular surgery unit by ribotyping, randomly amplified polymorphic DNA and pulsed-field gel electrophoresis. APMIS. 109(6): 474-480
Ghelardi, E., Celandroni, F., Salvetti, S., Barsotti, C., Baggiani, A., Senesi, S. 2002. Identification and characterization of toxigenic Bacillus cereus isolates responsible for two food-poisoning outbreaks. FEMS Microbiol Lett 208(1): 129-34
Gibert, I., Barbe, J. and Casadesus, J. 1990, Distribution of insertion sequence IS200 in Salmonella and Shigella. J. Gen. Microbiol. 136: 2555-60.
Gibson, J. B. and McKee, R. A. 1993. PCR products generated from unpurified Salmonella DNA are degraded by thermostable nuclease activity. Lett. Appl. Microbiol. 16: 59-61
Giffel, M. C., Bermer, R. R. Klijn, N. Wagendorp, A. and Rombouts, F. M. 1997. Discrimination between Bacillus cereus and Bacillus thuringiensis using specific DNA probes based on variable regions of 16S rRNA. FEMS Microbiol. Lett. 146: 47-51.
Gilmore, M. S., Cruz-Rodz A. L., Leimeister-Waechter, M., Kreft, J. and Goebel, W. 1989. A Bacillus cereus cytolytic determinant cereolysin AB, which comprises the phospholipase C and sphingomyelinase genes: nucleotide sequence and genetic linkage. J. Bacteriol. 171: 744-753
Glazer, A. N., Peck, K. and Mathies, R. A. 1990. A stable double-stranded DNA-ethidium homodimer complex: application to picogram fluorescence detection of DNA in agarose gels. Proc. Natl. Acad. Sci. USA 87: 3851-3855
Golub, T. R., Slonim, D. K., Tamayo, P., Huard, C., Gaasenbeek, M., Mesirov, J. P., Coller, H., Loh, M. L., Downing, J. R., Caligiuri, M. A., Bloomfield, C.D., Lander, E. S. 1999. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring.Science. 286(5439): 531-7.
Gooch, J. A., DePaola, A., Bowers, J. and Marshall, D. L. 2002. Growth and survival of Vibrio parahaemolyticus in postharvest American oysters. J Food Prot 65(6): 970-4
Gooding, C. M. and Choudary, P. V. 1997. Rapid and sensitive Immunomagnetic separation polymerase chain reaction method for the detection of Escherichia coli O157:H7 in raw milk and ice cream. J. Dairy Res. 64:87-93.
Goodridge, L., Chen, J. and Griffiths, M. 1999. The use of a fluorescent bacteriophage assay for detection of Escherichia coli O157:H7 in inoculated ground beef and raw milk. Int. J. Food Microbiol. 47:43-50.
Granum P. E., Andersson, A., Gayther, C., Giffel, M. T., Larsen, H., Lund, T. and Sullivan, K. O’. 1996. Evidence for a further enterotoxin complex produced by Bcaillus cereus. FEMS Microbiol. Lett. 141: 145-149.
Granum, P. E. 1994. Bacillus cereus and its toxins. J. Appl. Bacteriol. Symp. Suppl. 76:61S-66S.
Gregory, J. N., Jonathan, A. S., Don, S. D. and Darrell, P. C. 2002. ASM meeting (Abs)
Grunstein, M. and Hogness, D. S. 1975. Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene. Proc. Natl. Acad. Sci. USA. 72:3961-3965.
Guo, X., Shi, Z. and Gu, L. 2000. Using multiplex PCR for the detection of virulence genes in Escherichia coli O157:H7. Zhonghua Liu Xing Bing ZUE Za Zhi. 21(6): 410-412
Hacia, J. G. 1999. Resequencing and mutational analysis using oligonucleotide microarrays. Nature Genet. 21 (1 Suppl): 42-47,
Hamels, S., Gala, J. L., Dufour, S., Vannuffel, P., Zammatteo, N. and Remacle, J. 2001. Consensus PCR and Microarray for diagnosis of the genus Staphylococcus, species, and methicillin resistance. 31: 1364-1372.
Harrell, L. J., Andersen, G. L. and Wilson, K. H. 1995.Genetic variability of Bacillus anthracis and related species. J. Clin. Microbiol. 33: 1847-1850.
Hedegaard, J., Søren, A., Steffensen. A., NøRSKOV-Lauritsen, N., Mortensen, K.M. and Sperling-Petersen, H. 1999.Identification of Enterobacteriaceae by partial sequencing of the gene encoding translation initiation factor 2. Int J Syst Bacteriol.49: 1531-1538
Helgason, E., Økstad, O. A., Caugant, D. A., Johansen, H. A., Fouet, A., Mock, M., Hegna, I. and Kolstø, A. B. 2000. Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis－one species on the basis of genetic evidence. Appl. Environ. Microbiol. 66:2627-2630.
Henderson, I., Dugglehy, C. J. and Turnbull, P. C. B. 1994. Differentiation of Bacillus anthracis from other Bacillus cereus group bacteria with the PCR. Int. J. Syst. Bacteriol. 44: 99-105.
Henrik, S., Adam, J. B., Kenneth, O., Heather, P. andrew, S. and James, C. 2001. Rapid detection, identification, and enumeration of Escherichia coli cells in municipal water by chemiluminescent in situ hybridization. Appl Environ Microbiol.67: 142-147
Hernandez, F. Z., Goyache, J., Orden, J. A., Blanco, J. L., Domenech, A. and Suarez, G. 1993. Repair and enterotoxin synthesis by Staphylococcus aureus after thermal shock. Appl Environ. Microbiol. 59: 1515-1519
Hicks, S., Candy, D. C. A. and Phillips, A. D. 1996. Adhesion of enteroaggregative Escherichia coli to pediatric intestinal mucosa in vitro. Infect. Immun. 64: 4751-4760.
Hodgson, J.C. 1994. Disease due to Escherichia coli in sheep. In: Escherichia coli in Domestic Animals and Humans (Gyles, C.L., Ed.), p.135-150.CAB International, Wallingford.
Hofte, H. and Whiteley, H. R. 1989. Insecticidal crystal proteins of Bacillus thuringiensis. Microbiol. Rev. 53: 242-255.
Hoover, D. G., Tatini, S. R. and Maltais, J. B. 1988. Characterization of staphylococci. Appl. Environ. Microbiol. 46: 649-660
Iandolo, J. J. 1989.Genetic analysis of extracellular toxins of Staphylococcus aureus. Annu. Rev. Microbiol. 43: 375-402
Idia, T., Suthienkul, O., Prk, K. S., Tan, G. Q., Yamamoto, R. K., Ishibashi, M., Yamamoto, K. and Honda, T. 1997. Evidence for genetic linkage between the ure and trh genes in Vibrio parahaemolyticus. J. Med. Microbiol. 46: 639-645
Israel, D. A., Salama, N., Arnold, C. N., Moss, S. F., Ando, T., Wirth, H.P., Tham, K. T., Camorlinga, M., Blaser, M. J., Falkow, S., Peed Jr, R. M. 2001. Heliobacter pylori strain-specific differences in genetic content, identified by microarray, influence host inflammatory responses. J. Clin. Invest. 107: 611-620
Jack, S., Douglas, R. C., Fred, J. B., Timothy, M. S. and Darrell, P. C. 2001. Direct detection of 16S rRNA in soil extracts by using oligonucleotide microarrays. Appl Environ Microbiol. 67: 4708-4716
James, B. R., Francisco, D. G. and Graeme, N. J. 2000. Potential effect of cattle diets on the transmission of pathogenic Escherichia coli to human. Microbes and Infection. 2: 45-53
Jan Argentine(ed). 2001. Molecular cloning (3rd). Chapter 13.CSHL PRESS. New York.
Janyappon, K., Korbsrisate, S., Thamapa, H., Thongmin, S., Kanjanahareutai, S., Wongpredee, N. and Sarasombath, S. 2000. Rapid detection of Salmonella enterica serovar Choleraesus in blood cultures by a dot blot enzyme-linked immunosorbent assay. Clin Diagn Lab Immunol. 7(6): 977-979
Jenikova, G., Pazlarova, J. and Demnerova, K. 2000. Detection of Salmonella in food samples by the combination of Immunomagnetic separation and PCR assay. Int Microbiol. 3(4): 225-229
Jensen, G. B., Larsen, P., Jacobsen, B. L., Madsen, B., Wilcks, A., Smidt, L. and Andrup, L. 2002. Isolation and characterization of Bacillus cereus-like bacteria from fecal samples from greenhouse workers who are using Bacillus thuringiensis-based insecticides. Int Arch Occup Environ Health. 75(3): 191-196
Johnson, J. R. 2000. Development of polymerase chain reaction-based assays for bacterial gene detection. Journal of Microbiological methods. 41: 201-209
Jonas, D., Speck, M., Daschner, F. D. and Grundmann, H. 2002. Rapid PCR-based identification of methicillin-resistant Staphylococcus aureus from screening swabs. J Clin Microbiol 40(5): 1821-3
Jones, D. D., Law, R. and Bej, A. K. 1993. Detection of Salmonella spp. in oysters using polymerase chain reaction (PCR) and gene probes. J. Food Sci. 58:1191-1197.
Kane, M. D., Jatkoe, T. A., Stumpf, C. R., Lu, J., Thomas, J. R. and Madore, S. J. Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays. Nuclic Acids Res. 28: 4552-4557
Kaneko, T., Nozaki, R. and Aizawa, K. 1978. Deoxyribonucleic acid, relatedness between Bacillus anthracis, Bacillus cereus and Bacillus thuringiensis. Microbiol. Immun. 22: 639-641.
Kaper, J. B. 1994. Molecular pathogenesis of Enteropathogenic Escherichia coli. In: Molecular Genetics of Bacterial Pathogenesis (Miller, V.L., Kaper, J.B., Portnoy, D.A. and Isberg, R.R., Eds.) p. 173-195. ASM Press, Washington, DC.
Kauffmann, F. 1947. The serology of the Escherichia coli group. J. Immunol. 57, 71-100.
Kauffmann, F. 1966. The bacteriology of Enterobacteriaceae. Munksgaard, Copenhagen, Denmark.
Keasler, S. P., Feng, P. and Hill, W. E. 1992. Direct identification of Yersinia enterocolitica in blood by polymerase chain reaction amplification. Transfusion. 32(9): 850-4.
Kerr, P., Finlay, D., Thomson-Carter, F. and Ball, H. J. 2001.A comparison of a monoclonal antibody-based sandwich ELISA and Immunomagnetic bead selective enrichment for the detection of Escherichia coli O157 from bovine faces. J. Appl. Microbiol. 91(5): 933-936
Khan, A., Das, S. C., Ramamurthy, T., Sikdar, A., Khanam, J., Yamasaki, S., Takeda, Y., Nair, G. B. 2002a. Antibiotic resistance, virulence gene, and molecular profiles of Shiga toxin-producing Escherichia coli isolates from diverse sources in Calcutta, India. J Clin Microbiol. 40(6): 2009-15
Khan, A. A., McCarthy, S., Wang, R. F. and Cerniglia, C. E. 2002b. Characterization of United States outbreak isolates of Vibrio parahaemolyticus using enterobacterial repetitive intergenic consensus (ERIC) PCR and development of a rapid PCR method for detection of O3:K6 isolates. FEMS Microbiol. Lett. 206(2): 209-214
Khan, A. A., Nawaz, M. S., Khan, S. A. and Cerniglia, C. E. 2000. Detection of multidrug-resistant Salmonella typhimurium DT104 by multiplex polymerase chain reaction. FEMS Microbiol. Lett. 182:355-360.
Khoodoo, M. H., Issack, M. I. and Jaufeerally-Fakim, Y. 2002. Serotyping and RAPD profiles of Salmonella enterica isolates from Mauritius. Lett Appl Microbiol 35(2): 146-52
Kishishita, M., Matsuoka, N., Kumagai, K., Yamasaki, S., Takeda, Y. and Nishibcuhi, M. 1992. Sequence variation in the thermostable direct hemolysin-related hemolysin (trh) gene of Vibrio parahaemolyticus. Appl. Environ. Microbiol. 58: 2449-2457
Kloos, W. E. and Schleifer, K. H. 1975. Simplified scheme for routine identification of human Staphylococcus species. J. Clin. Microbiol. 1: 82-88
Kloos, W. E. and Bannerman, T. L. 1995. Staphylococcus and Micrococcus. In Manual of Clinical Microbiology, 6th ed., p. 282-298.American Society for Microbiology, Washington, D.C.
Knut, R., Olav, M. S., Randi, S. and Khetill, S. J. 2000. Application of sequence-specific labeled 16S rRNA gene oligonucleotide probes for genetic profiling of Cyanobacterial abundance and diversity by array hybridization. Applied and Environmental Microbiology. 66: 4004-4011
Knut, R., Sigene, L. F., Fon, F. H., Gunnar, B. and Hilde, N. 2002. Development and evaluation of a 16S ribosomal DNA array-based approach for describing complex microbial communities in ready-to-eat vegetable salads packed in a modified atmosphere. Applied and Environmental Microbiology. 68: 1146-1156
Kong, R. T. C., Dung, W. F., Vrijmoed, L. L. P. and Wu, R. S. S. 1995. Co-detection of three species of water-borne bacteria by multiplex PCR. Marine Pollution Bulletin. 31: 317-324
Kramer, J. M. and Gilbert, R. J. 1989. Bacillus cereus and other Bacillus species, p. 21-70. In M. P. Doyle (ed.), Foodborne bacterial pathogens. Marcel Dekker, Inc., New York.
Kristen, D. B. and Trevors J. T. 2002. Bacterial genomics: the use of DNA microarrays and bacterial artificial chromosomes. Journal of Microbiological Methods. 49: 275-284
Kurian, K.M., Watson, C. J .and Wyllie, A. H. 1999. DNA chip technology. J Pathol. 187: 267-271
Lampel, K. A., Keasler, S. P. and Hanes, D. E. 1996. Specific detection of Salmonella enterica serotype Enteritidis using the polymerase chain reaction. Epidemiol. Infect. 116: 137-145.
Lang, A. L., Tsai, Y. L., Mayer, C. L., Patton, K. C. and Palmer, C. J. 1994. Multiplex PCR for detection of the heat-labile toxin gene and shiga-like toxin I and II genes in Escherichia coli isolated from natural waters. Appl. Environ. Microbiol. 60, 3145-3149.
Lachica, V. R. F. 1980. Accelerated procedure for the enumeration and identification of food-borne Staphylococcus aureus. Appl. Environ. Microbiol. 39: 17-19
Larson, E. J., Hakovirta, J. R., Cai, H., Jett, J. H., Burde, S., Keller, R. A. and Marrone, B. L. 2000. Rapid DNA fingerprinting of pathogens by flow cytometry. Cytometry. 41(3): 203-208
Lee, H. A., Wyatt, G. M., Bramham, S. and Morgan, M. R. A. 1990. Enzyme-linked immuno-sorbent assay for Salmonella Typhimurium in food: Feasibility of 1-day Salmonella detection. Appl. Environ. Microbiol. 56:1541-1546.
Lennon, G. G., Lehrach, H., 1991. Hybridization analyses of arrayed cDNA libraries. Trends Genet. 7, 314—317.
Levine, M. M. 1987. Escherichia coli that cause diarrhea: enterotoxigenic, enteropathogenic, enteroinvasive, enterohemorrhagic, and enteroadherent. J. Infect. Diseases. 155, 377-389.
Levine, W. C., Smart, J. F., Archer, D. L., Bean, N. H. and Tauxe, R. V. 1991. Foodborne disease outbreaks in nursing homes, 1975 through 1987.J. Am. Med. Assoc. 266: 2105-2109
Li, X., Boudjellab, N. and Zhao, X. 2000. Combined PCR and slot blot assay for detection of Salmonella and Listeria monocytogenes. Int. J. Food Microbiol. 56:167-177.
Liang, P. and Pardee, A. B., 1992. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257, 967—971.
Lin, C. K. and Tsen, H. Y. 1996. Use of two 16S DNA targeted oligonucleotides as PCR primers for the specific detection of Salmonella in foods. J. Appl. Bacter. 80:659-666
Lin, C. K. and Tsen, H. Y. 1995. Development and evaluation of two novel oligonucleotide probes based on 16S rRNA sequence for the identification of Salmonella in foods. J. Appl. Microbiol. 78: 507-520
Lin, J. S. and Tsen, H. Y. 1999. Development and use of polymerase chain reaction for the specific detection of Salmonella typhimurium in stool and food samples. J. Food. Prot. 62: 1103-1110
Lipshutz, R. J., Fodor, S. P. A., Gingeras, T. R. and Lockhart, D. J. 1999. High-density synthesis oligonucleotide arrays. Suppl. Nat. Genet. 21: 20-24
Lockhart, D. J., Dong, H., Byrne, M. C., Follettie, M. T., Gallo, M. V., Chee, M. S., Mittmann, M., Wang, C., Kobayashi, M., Horton, H. and Brown, E. L. 1996. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nature Biotech. 14: 1675-1680
Lu, S., Manges, A. R., Su, Y., Fang, F. C. and Riley, L.W. 1999. Analysis of virulence of clinical isolates of Salmonella enteritidis in vivo and in vitro. Infect. Immun. 67: 5651-5657
Lucchini, S., Thompson, A. and Hinton, J. C. D. 2001. Microarrays for microbiologists. Microbiology. 147: 1403-1414
Lund, T. and Granum, P. E. 1996. Characterization of a non-haemolytic enterotoxin complex from Bacillus cereus isolated after a foodborne outbreak. FEMS Microbiol. Lett. 141: 151-156.
Luscher, D. and Altwegg, M. 1994. Detection of shigellae, enteroinvasive and enterotosigenic Escherichia coli using the polymerase chain reaction (PCR) in patients returning from tropical countries. Molecular Cell Probes. 8, 285-290.
Malorny, B., Schroeter, A., Bunge, C. and Helmuth, R. 2002. Prevalence of Escherichia coli O157:H7 prophage-like sequences among German Salmonella enterica serotype Typhimurium phage types and their use in detection of phage type DT104 by the polymerase chain reaction. Vet Microbiol 87(3): 253-65
Mansfield, L. P. and Forsythe, S. J. 1993. Immunomagnetic separation as an alternative to enrichment broths for Salmonella detection. Lett. Appl. Microbiol. 15:122-125.
Mantynen, V. and Lindstrom, K. 1998. A rapid PCR-based DNA test for enterotoxic Bacillus cereus. 64(5): 1634-1639
Massini, R. 1907. Uber eine in biologischer beziehung interessanten kolistamm (bact, coli mutabile); ein beitrag zur variation bei bakterien. Arch. Hyg. LI, 250-292. (Abs.)
McAdams, H. H. and Shapiro, L.1995.Circuit simulation of genetic networks. Science 269: 650-656,
McCarthy, S. A., DePaola, A., Kaysner, C. A., Hill, W. E. and Cook, D. W. 2000. Evaluation of nonisotopic DNA hybridization methods for detection of the tdh gene of Vibrio parahaemolyticus. J. Food. Prot. 63(12): 1660-1664
Mcdaniels, A. E., Rice, E. W., Reyes, A. L., Johnson, C. H., Haugland, R. A. and Stelma, G. N. 1996. Conformational identification of Escherichia coli, a comparison of genotypic and phenotypic assays for glutamate decarboxylase and β-D-glucuronidase. Appl. Environ. Microbiol. 62, 3350-3354.
Mead, P. S. Slutsker, L., Dietz, V., McCaig, L. F., Bresee, J. S., Shapiro, C., Friffin, P. and Tauxe, R. V. 1999. Food-related illness and death in the United States. Emerg. Infect. Dis. 5: 607-625
Mishu, B. J., Koehler, L. A., Lee, D., Rodrigue, F. H., Brenner, P., Blake, and Tauxe, R. V. 1994. Outbreaks of Salmonella Enteritidis infections in the United States, 1985-1991. J. Infect. Dis. 169: 547-552
Morais, T. B., Gomes, T. A. T. and Sigulem, D. M. 1997. Enteroaggregative Escherichia coli in infant feeding bottles. Lancet. 349, 1148-1149.
Mullis, K. B. and Faloona, F. A. 1987. Specific synthesis of DNA in vitro via a polymerase catalyzed chain reaction. In Methods Enzymology (Ed. R. Wu) pp. 335-350. Vol. 155. Academic Press Inc., San Diego, CA.
Naomi, B. and Avraham, R. 2000. Staphylococcal enterotoxins. Int J Food Microb. 61: 1-10
Nataro, J. P. and Kaper, J. B. 1998a. Diarrheagenic Escherichia coli. Clin. Microbial. Rev. 11: 142-201
Nataro, J. P., Steiner, T. and Guerrant, R. L. 1998b. Enteroaggregative Escherichia coli. Emerg. Infect. Dis. 4: 251-261
Nicole, L. W van Hal., Oscar, V., Adele, M. L. 2000. The application of DNA microarrays in gene expression analysis. 78: 271-280
Oberst, R. D., Hays, M. P., Bohra, L. K., Phebus, R. K., Yamashiro, C. T., Kolva, P. C., Flood, S. J. A., Sargeant, J. M. and Gillespie, J. R. 1998. PCR-based DNA amplification and presumptive detection of Escherichia coli O157:H7 with an internal fluorogenic probe and the 5’ nuclease (TaqMan) assay. Appl. Environ. Microbiol. 64:3389-3396.
Ocasio, W. J. R. and Fung, D. Y. C. 1984. Significance of Staphylo-coagulase in food Microbiology. J. Food. Safety. 6: 211-239
Ogunjimi, A. A. and Choudary, P. V. 1999. Adsorption of endogenous polyphenols relieves the inhibition by fruit juices and fresh produce of immuno-PCR detection of Escherichia coli O157:H7. FEMS Immunol. Med. Microbiol. 23:213-220.
Okitsu, T., Osawa, R., Pornruangwong, S. and Yamai, S. 1997.Urea hydrolysis and suppressed production of thermostable direct hemolysin (TDH) by Vibrio parahaemolyticus associated with presence of TDH-related hemolysin genes. Curr. Microbiol. 34: 314-317
Okrend, A. J. G., Rose, B. E. and Bennent, B. 1990. A screening method for the isolation of Escherichia coli O157: H7 from ground beef. J. Food Prot. 53, 249-252.
Okuda, J., Ishibashi, M., Abbott, S. L., Janda, J. M. and Nishibuchi, M. 1997 Analysis of the thermostable direct hemolysin (tdh) gene and the tdh-related hemolysin (trh) genes in urease-positive stains of Vibrio parahaemolyticus isolated on the West Coast of the United States. J.Clin.Microbiol. 35: 1965-1975
Olsen, G. J., Lane, D. J., Giovannoni, S. J., Pace, N. R. and Stahl, D. A. 1986. Microbial ecology and evolution: a ribosomal rRNA approach. Annu. Rev. Microbiol. 40: 337-365
Olsen, J. E., Aabo, S., Rasmussen, O. F. and Rossen, L. 1995. Oligonucleotide probes specific for the genus Salmonella and for Salm. Typhimurium. Lett. Appl. Microbiol. 20: 160-163.
Omoe, K., Ishikawa, M., Shimoda, Y., Hu, D. L., Ueda, S. and Shinagawa, K. Detection of seg, she, and sei genes in staphylococcus aureus isolates and determination of the enterotoxin productivities of S. aureus isolates Harboring seg, she or sei genes.J. Clin. Microbiol. 40(3): 857-862
Pan, T. M., Wang, T. K., Lee, C. C., Chien, S. W. and Horng, C. B. 1997. Food-borne disease outbreaks due to bacteria in Taiwan, 1986 to 1995. J. Clin. Microbiol. 35: 1260-1262
Peck, K., Stryer, L., Glazer, A. N. and Mathies, R. A. 1989. Single-molecule fluorescence detection: autocorrelation criterion and experimental realization with phycoerythrin. Proc. Natl. Acad, Sci. USA 86: 4087-4091.
Perez-Roth, E., Claverie-Martin, F., Villar, J. and Mendez-Alvarez, S. 2001. Multiplex PCR for simultaneous identification of Staphylococcus aureus and detection of methicillin and mupirocin resistance. J. Clin. Microbiol. 39(11): 4037-4041
Peter, K. F., Michael, A. h\H., Karl, A. B. and Steven P. D. 1999. Detection of Shiga-like toxin (stx1 and stx2), intimin (eaeA), and enterohemorrgagic Eshcerichia coli (EHEC) hemolysin (EHEC hlyA) genes in animal feces by multiplex PCR. Appl. Environ. Microbiol. 65: 868-872
Peter, K., Ptrick, B. and Joachim, F. 2000. Target genes for virulence assessment of Escherichia coli isolates from water, food and the environment. FEMS Microbiology Reviews. 24: 107-117
Phelps, R. J. and McKillip, J. L. 2002. Enterotoxin Production in Natural Isolates of Bacillaceae outside the Bacillus cereus Group. Appl Environ Microbiol 68(6): 3147-51
Plays, T., Nakamura, L. K. and Cohan, F. 1997. Discovery and classification of ecological diversity in the bacterial world; the role of DNA sequence data. Int J Syst Bacteriol. 47: 1145-1156.
Popoff, M. Y., Bockemühl, J. and Brenner. F. W. 2000. Supplement 1998 (no. 42) to the Kauffmann-White scheme. Res Microbiol. 151: 63-65
Rehm, W. S. 1992a. Doc Painter and the mighty New York Yankees ... Ruth, DiMagio and Gehrig were his patients.Chiropr Hist. 12(1):10-11. No abstract available.
Rehm, S. J. 1992b. Infectious enteritis Ch. 36. In Achkar, E., R. G. Farmer, and B. Fleshler (ed.), Clinical gastroenterology, 2th. Lea & Febiger.
Richmond, C. S., Glasner, J. D., Mau, R., Jin, H., Blattner, F. R. 1999. Genome-wide expression profiling in Escherichia coil K-12. Nucleic Acids Res. 27: 3821-3835
Riffon, R., Sayasith, K., Khalil, H., Dubreuil, P., Drolet, M. and Lagace, J. 2001. Development of a rapid and sensitive test for identification of major pathogens in bovine mastitis by PCR. J. Clin. Microbiol. 39(7): 2584-2589
Rijpens, N., Herman, L., Vereecken, F., Jannes, G., Smedt, J. D. and Zutter, L. D. 1999. Rapid detection of stressed Salmonella spp. in dairy and egg products using immunomagnetic separation and PCR. Int. J. Food Microbiol. 46:37-44.
Ronner, A. B. and Cliver, D. O. 1990. Isolation and characterization of coliphage specific for Escherichia coli O157:H7. J. Food. Prot. 53:944-947.
Rossen, L., Norskov, P., Holmstrm, K. and Rrasmussen, O. F. 1992. Inhibition of PCR by components of food samples, microbiol diagnostic assays and DNA-extraction solutions. Int. J. Food Microbiol. 17, 37-45.
Saiki, R. K., Gelfan, D. H., Stoffel, S., Scharf, S., Higuchi, R., Horn, G. T., Mullis, K. B. and Erlich, H. A. 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Sci. 239:487-491.
Saiki, R. K., Scharf, S., Faloona, F., Mullis, K. B., Horn, G. T., Erlich, H. A. and Arnheim, N. 1985. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Sci. 230:1350-1354.
Saizieu, A., Certa, U., Warrington, J., Gray, C., Keck, W. and Mous, J. 1998. Bacterial transcript imaging by hybridization of total RNA to oligonucleotide arrays. Nat. Biotechnol 16: 45-48
Salama, N., Guillemin, K., McDaniel, T.K., Sherlock, G., Tompkins,L., Falkow, S., 2000. A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains.
Schena, M., Shalon, D., Davis, R. W. and Brown, P. O. 1995. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science. 270: 467-470
Schena, M., Shalon, D., Davis, R. W. and Brown, P. O. 1996. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science. 270: 467-470
Schlosser, W., Hogue, A., Ebel, E., Rose, B., Umholtz, R., Ferris, K. and James, W. 2000. Analysis of Salmonella serotypes from selected carcasses and raw ground products sampled prior to implementation of the pathogen reduction; hazard analysis and critical control point final rule in the US. Int. J. Food Microbiol. 30:107-111.
Schoeni, J. L., Glass, K. A., McDermott, J. L. and Wong, A. C. 1995. Growth and permeation of Salmonella enteritidis, Salmonella heidelberg and Salmonella typhimuirum in eggs. Int. J. Food Microbiol. 24:385-396.
Schrank, I. S., Mores, M. A., Costa, J. L., Frazzon, A. P., Soncini, R., Schrank, A., Vainstein, M. H. and Silva, S. C. 2001. Influence of enrichment media and application of a PCR based method to detect Salmonella in poultry industry products and clinical samples. Vet Microbiol. 82(1): 45-53
Seki, T., Chung, C. K., Mikami, H. and Oshima, Y. 1978. Deoxyribonucleic acid homology and taxonomy of the genus Bacillus. Int. J. Sys. Bacteriol. 28: 182-189.
Selinger, D. W., Cheung, K. J., Mei, R., Johansson, E. M., Richmond,C. S., Blattner, F. R., Lockhart, D. J., Church, G. M., 2000. RNA expression analysis using a 30-base pair resolution Escherichia coli genome array. Nat. Biotechnol. 18, 1262—1268.
Sergei, G. B., Akowski, J. P. Zakhariev, V. M., Barsky, V. E., Perov, A. N. and Mirzabekov, A. D. 2001.Portable system for microbial sample preparation and oligonucleotide microarray analysis. Appl. Envir. Microbiol. 67: 922-928.
Shaw, S. J., Blais, B. W. and Nundy, D. C. 1998. Performance of the Dynabeads anti-Salmonella system in the detection of Salmonella species in foods, animal feeds, and environmental samples. J. Food Prot. 61:1507-1510.
Shinagawa, K., Sugiyama, J., Terada, T., Matsusaka, N. and Sugii, S. 1991. Improved methods for purification of an enterotoxin produced by Bacillus cereus. FEMS Microbiol. Lett. 80: 1-6.
Shinagawa, K. 1990. Analytical methods for Bacillus cereus and other Bacillus species. Int. J. Food. Microbiol. 10:125-141
Sloos, J. H., L. Dijkshoorn, L. Vogel, and C. P. A. VAN Boven. 2000. Performance of phenotypic and genotypic methods to determine the clinical relevance of serial blood isolates of Staphylococcus epidermidis in patients with septicemia. J. Clin. Microbiol. 38:2488-2493.
Sockett, P. N., Cowden, J. M., Baigue, S. L. Ross, D. Adak, G. J. and Evans, H. 1993. Foodborne disease surveillance in England and Wales: 1989-1991. Communicable Dis. Rep. Rev. 3: R159-R173
Song, J. H., Cho, H., Park, M., Na, D. S., Moon, H. B. and Pai, C. H. 1993. Detection of Salmonella typhi in the blood of patients with typhoid fever by polymerase chain reaction. J. Clin. Microbiol. 31: 1439-1443.
Soumet, C., Blivet , D., Ermel, G., Colin, P. and Salvat, G. 1999. An immunoconcentration-PCR assay to detect Salmonella in the environment of poultry houses. Int J Food Microbiol. 48(3):221-4.
Soumet, C., Ermel, G., Rose, N., Rose, V., Drouin, P., Salvat, G. and Colin, P. 1999. Evaluation of a multiplex PCR assay for simultaneous identification of Salmonella sp., Salmonella enteritidis and Salmonella typhimurium from environmental swabs of poultry houses. Lett. Appl. Microbiol. 28, 113-117.
Southern, E. M. 1975. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98:503-517.
Stackebrandt, E. and Goebel, B. M. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846—849.
Stackebrandt, E., Rainey, F. A. and Ward-Rainey, N. L. 1997. Proposal for a new hierarchic classification system Actinobacteria classis nov. In t. J. Syst. Bacteriol. 47: 479-491
Tan, T. Y., Corden, S., Barnes, R. and Cookson, B. 2001. Rapid identification of methicillin-resistant Staphylococcus aureus from positive blood cultures, by real-time PCR. J. Clin. Microbiol. 39(12): 4529-4531
Tao, H., Bausch, C., Richmond, C., Blattner, F.R., Conway, T.,1999. Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media. J. Bacteriol.181, 6425—6440.
Tarr, P. I. 1994. Enterocolitis associated with Shiga-like toxin production: an appropriate animal model at last? Gastroenterology. 106:540-543
Taylor, D. N., Echeverria, P., Pal, T., Sethabutr, O., Saiborisuth, S., Sricharmorn, S., Rowe, B. and Cross, J. 1986. The role of Shigella spp., enteroinvasive Escherichia coli, and other enteropathogens as causes of childhood dysentery in Thailand. J. Infect. Diseases. 153, 1132-1138.
Terai, A., Baba, K., Shirai, H., Yoshida, O., Takeda, Y. and Nishibuchi, M. 1991.Evidence for insertion sequence-mediated spread of the thermostable direct hemolysin gene among Vibrio species. J.Bacteriol. 173: 5036-5046
Terefework, G. N. Z., Suomalainen, S., Paulin, L. and Lindsrtrom, K. 1998. Phylogeny of Rhixobium galegae with respect to other rhizobia and agrobacteria. Int J. Syst. Bacteriol. 48: 349-356.
Thompson, N. E., Keterhaen, M. J. Bergdoll, M. S. and Shantz, E. J. 1984. Isolation and some properties of and enterotoxin produced by Bacillus cereus. Infect. Immun. 43 : 887-894.
Thoren, A.1983 Enterotoxin production, invasive ability and surface antigens of enteropathogenic Escherichia coli. Eur J Clin Microbiol. 2(5): 478-9.
Torensma, R., Visser, M. J., Aarsman, C. J., Poppelier, M. J. van Beurden, R., Fluit, A. C. and Verhoef, J. 1992. Monoclonal antibodies that detect live salmonellae. Appl Environ Microbiol. Dec: 58(12): 3868-72.
Tremolieres, F. 1996. Food poisoning-infections in metropolitan France. Rev. Prat. 46: 158-165.
Troesch, A., Nguyen, H., Miyada, C. G., Desvarenne, S., Gingeras, T. R., Kaplan, P. M., Cros, P. and Mabilat, C. 1999. Mycobacterium species identification and rifampin resistance testing with high-density DNA probe arrays. J. Clin. Microbiol. 37: 49-55
Tsen, H. Y., Chen, M. H., Shieh, J. S., Wang, S. J. and Hu, N. T. 1989. Possible use of a 1.8 kb DNA fragment for the specific detection of Salmonella in foods. Journal of Fermentation and Bioengineering. 68:1-8.
Tsen, H. Y., Chi, W. R. and Lin, C. K. 1996. Use of novel polymerase chain reaction primers for the specific detection of heat labile toxin Ⅰ, heat stable toxinⅠand Ⅱ enterotoxigenic Escherichia coli in milk. J. Food. Prot. 59: 795-802
Tsen, H. Y., Jian, L. Z., Chi, W. R. 1998a. Use of a multiplex PCR system for the simultaneous detection of heat labile toxin I and heat stable toxin II genes of enterotoxigenic Escherichia coil in skim milk and porcine stool. J Food Prot. 1; 61(2): 141-5.
Tsen, H. Y., Jian, L. Z. 1998b. Development and use of a multiplex PCR system for the rapid screening of heat labile toxin I, heat stable toxin II and shiga-like toxin I and II genes of Escherichia coli in water. J Appl Microbiol. 1998 Apr; 84(4): 585-92.
Tsen, H. Y., Lin, C. L. and Chi, W. R. 1998c. Development and use of 16S rRNA targeted PCR primers for the identification of Escherichia coli cells in water. J. Appl. Microbiol. 85: 554-560.
Tsen, H. Y., Liou, J. W. and Lin, C. K. 1994. Possible use of a polymerase chain reaction method for specific detection of Salmonella in beef. Journal of Fermentation and Bioengineering. 77:137-143
Tsuruoka, M., Murano, S., Okada, M., Ohiso, I. and Fujii, T. 2001. The extremely rapid oligonucleotide hybridization and high throughput detection of microbial gene sequences using fluorescence polarization. 16: 695-699
Valdivieso-Garcia, A., Riche, E., Abubakar, O., Waddell, T.E. and Brooks, B.W. 2001. Adouble antibody sandwich enzyme-linked immunosorbent assay for the detectin of Salmonella using biotinylated monoclonal antibodies. J Food Prot. 64(8): 1166-1171
Velculescu, V. E., Zhang, L., Vogelstein, B., Kinzler, K. W.1995. Serial analysis of gene expression. Science 270, 484—487.
Venkateswaran, K., Kurusu, T., Satake, M. and Shinoda, S. 1996. Comparison of a fluorogenic assay with a conventional method for rapid detection of Vibrio parahaemolyticus in seafood. Appl. Environ. Microbiol. 62(9): 3516-3520
Warren, E., Rogolsky, M., Wiley, B. B. and Glasgow, L. A. 1975. Isolation of extrachromosomal deoxyribonucleic acid for Exfoliative toxin production from phage group Ⅱ Staphylococcus aureus. J. Bacteriol. 122: 99-105
Way, J. S., Josephson, K. L., Pillai, S. D., Abbaszadegan, M., Gerba, C. P. and Pepper, I. L. 1993. Specific detection of Salmonella spp. by multiplex polymerase chain reaction. Appl. Environ. Microbiol. 59:1473-1479.
Weisburg, W. G., Barns, S. M., Pelletier, D. A. and Lane, D. J. 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173:697—703.
Welsh, J. and McClelland, M. 1990. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18:7213-7218.
Widjojoatmodjo, M. N., Fluit, A. C., Torensma, R., Verdonk, G. P. and Verhodf, J. 1992. The magnetic immuno polymerase chain reaction assay for direct detection of Salmonellae in fecal samples. J. Clin. Micrbiol. 30:3195-3199.
Williams, J. G. K., Kubelik, A. R., Livark, K. J., Rafalski, J. A. and Tingey, S. V. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18:6531-6535.
Wilson, W. J., Strout, C. L., DeSantis, T. Z., Stilwell, J. L., Carrano, A. V. and Andersen, G. L. 2002. Sequence-specific identification of 18 pathogenic microorganisms using microarray technology. Molecular and Cell Probes. 16: 119-127
Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51: 221-271
Wong, H. C. and Lin, C. H. 2001. Evaluation of typing of Vibrio parahaemolyticus by three PCR methods using specific primers. J Clin Microbiol. 39(12): 4233-40
Wunschel, D., Fox, K. F. Black, G. E. and Fox, A. 1994. Discrimination among the B. cereus group, in comparison to B. subtilis, by structural carbohydrate profiles and ribosomal RNA spacer region PCR. Sys. Appl. Microbiol. 17: 625-635.
Yamada, S., Ohashi, E., Agata, N. and Venkateswaran, K. 1999. Cloning and nucleotide sequence analysis of gyrB of Bacillus cereus, B. thuringiensis, B. mycoides, and B. anthracis and their application to the detection of B. cereus in rice. Appl. and Environ. Microbiol. 65 : 1483-1490.
Ye, R. W., Tao, W., Bedzyk, L. and Croker, K. M. 2001. Applications of DNA microarrays in microbial systems. Journal of Microbiological Methods. 47: 257-272
Ye, R. W., Tao, W., Bedzyk, L., Young, T., Chen, M., Li, L., 2000. Global gene expression profiles of Bacillus subtilis grown under anaerobic conditions. J. Bacteriol. 182: 4458-4465
Ye, W. R., Wang, T., Bedzyk, L., Croker, K. M. 2001. Applications of DNA microarrays in microbial systems. Journal of Microbiological Methods. 47: 257-272
Zhu, Q., Lim, C. K. and Chan, Y. N. 1996. Detection of Salmonella typhi by polymerase chain reaction. J. Appl. Bacteriol. 80: 244-251.