|
五、參考文獻 Alberch, P., S. J. Gould, G. F. Oster, and D. B. Wake, 1979. Size and shape in ontogeny and phylogeny. Paleobiology 5: 296-317. Avise, J. C., 1994. Molecular markers, natural history and evolution. Chapman and Hall New York. USA. Pp.i-xv, 1-511. Baba, K., K. I. Hayashii, and M. Toriyama, 1986. Decapod Crustaceans from Continental Shelf and Slope Around Japan. Japan Fisheries Resource Conservation Association. Japan. Pp.1-336. Babcock, C. S., J. M. Heraty, P. J. De Barro, F. Driver, and S. Schmidt, 2001. Preliminary phylogeny of Encarsia Förster (Hymenoptera: Aphelinidae) based on morphology and 28S rDNA. Mol. Phyl. Evol., 18 (2):306-323 Baco, A. R., C. R. Smith, A. S. Peek, G. K. Roderick, and R. C. Vrijenhoek, 1999. The phylogenetic relationships of whale-fall vesicomyid clams based on mitochondrial COI DNA sequences. Mar. Ecol. Prog. Ser., 182: 137-147. Baldwin, J D., A. L. Bass, B W. Bowen, and W. H. Clark, 1998. Molecular phylogeny and biogeography of the marine shrimps Penaeus. Mol. Phyl. Evol., 10 (3): 399-407. Barlow, G. W., 1961. Causes and significance of morphological variation in fishes. Syst. Zool., 10: 105-117. Bernardi, G., P. Sordino, and D. A. Powers, 1992. Nucleotide sequence of the 18S ribosomal ribonucleic acid gene from two teleosts and two shark and their molecular phylogeny. Mol. Mar. Bio. Biotech., 1: 187-194. Black, M. B., K. M. Halanych, P. A. Y. Maas, W. R. Hoeh, J. Hashimoto, D. Desbruyères, R. A. Lutz, and R. C. Vrijenhoek, 1997. Molecular systematics of vestimentiferan tubeworms from hydrothermal vents and cold-water seeps. Mar. Biol., 130: 141-149. Braga, E., R. Zardoya, A. Meyer, and J. Yen, 1999. Mitochondrial and nuclear rRNA based copepod phylogeny with emphasis on the Euchaetidae (Calanoida). Mar. Biol., 133: 79-90. Cedergren, G., M. W. Gray, Y. Abel, and D. Sankoff, 1988. The evolutionary relationships among known life forms. J. Mol. Evol., 28: 98-112. Chace, F. A., 1985. The Caridean Shrimps (Crustacea : Decapoda of the Albatross Philippine Expedition , 1907-1910 , Part 3 : Families Thalassocarididae and Pandalidae . Smithsonian Contributions to Zoology. 411: 1-143. Chan, T. Y., 1998. Shrimps and prawns, Lobsters. In : K E. Carpenter and V. H. Niems (eds), FAO identification guide for fisheries purpose, The living marine resources of the Western Central Pacific. Vol. II: 851-1043. FAO, Rome. Chan, T. Y. and H. P. Yu, 1987 . On the Heterocarpus shrimps (Crustacea : Decapoda : Pandalidae) from Taiwan. Bull. Inst. Zool., 26(1): 53-60. Chen, C. A., D. M. Odorico, M. ten Louis, J. E. Veron, and D. J. Miller, 1995. Systematic relationships within the Anthozoa (Cnidaria: Anthozoa) using the 5’- end of the 28S rDNA. Mol. Phyl. Evol., 4(2): 175-183. Chen, C. A., C. C. Wallace, J. K. Yu, and N. V. Wei, 2000. Strategies for amplification by polymerase chain reaction of the complete sequence of the gene encoding nuclear large subunit ribosomal RNA in corals. Mar. Biotech., 2: 558-570. Cock, A. G., 1966. Genetical aspects of metrical growth and form in animals. Q. Rev. Biol., 41: 131-190. Creasey, S. S., and A. D. Roger, 1999. Population genetics of bathyal and abyssal orgamisms. Adv. Mar. Biol., 35 (1): 1-151. Crosiner, A., 1988. Sur les Heterocarpus (Crustacea , Decapoda , Pandalidae) du sud-ouest de l’océan Indien . Remarques sur d’autres espèces ouest —pacifiques du genre et description de quatre taxa nouveaux . Bull. Mus. Natn. Hist. Nat., Paris, 4(10): 57-103. Crosnier, A., 1999. Un Heterocarpus noureau (Crustacea, Decapoda, Pandalidae) du Pacifique Sud-Ouest. Zoosy., 2(2): 345-351. Davidson, K., J. C. Roff, and R. W. Elner, 1985. Morphological, electrophoretic, and fecundity characteristics of Atlantic snow crab, Chionoecetes opilio, and implications for fisheries management. Can. J. Fish. Aquat. Sci., 42 (3): 474-482. Dayrat, B., A. Tillier, G. Lecointre, and S. Tillier, 2001. New clades of Euthy-neuran Gastropods (Mollusca) from 28S rRNA sequences. Mol. Phyl. Evol., 19(2): 225-235. De Rijk, P., Y. Van de Peer, I. Van den Broeck, and R. de Wachter, 1995. Evolution According to Large Ribosomal Subunit RNA. J. Mol. Evol., 41: 366-375. Dietrich, C. H., R. A. Rakitov, J. L. Holmes, and W. C. Black, 2001. Phylogeny of the major lineges of Membracoidea (Insecta: Hemiptera: Cicadomorpha ) based on 28S rDNA sequences. Mol. Phyl. Evol., 18(2): 293-305. Dover, G. A. and E. Coen, 1981. Springcleaning ribosomal DNA: a model for multigene evolution? Nature, 290: 731-732. Felsenstein, J., 1981. Evolutionary tree from DNA sequences: a maximum likelihood approach. J. Mol. Evol., 17: 368-376. Felsenstein, J., 1985. Confidence limits on phylogenies : an approach using the bootstrap. Evolution, 39: 783-791. Field, K. G., G. J. Olsen, D. J. Lane, S. J. Giovannoni, M. T. Ghiselin, E. C. Raff, N. R. Pace, and R. A. Raff, 1988. Molecular phylogeny of the animal kingdom. Science, 239: 748-753. Fitch, W. M., 1971. Toward defining the course of evolution : minimal change for a species tree topology. Syst. Bio., 20: 406-416. France, S. C., and T. D. Kocher, 1996. DNA sequencing of formalin-fixed crustaceans from archival research collections. Mol. Mar. Biol. Biotech.,5(4): 304-313. France, S. C., P. E. Rosel, J. E. Agenbroad, L. S. Mullineaux, and T. D. Kocher, 1996. DNA sequence variation of mitochondrial large-subunit rRNA provides support for a two-subclass organization of the Anthozoa (Cnidaria). Mol. Mar. Biol. Biotech., 5: 15-28. Fuiman, L. A., J. D. Gage, and P. A. Lamont, 1999. Shell morphometry of the deep sea protobranch bivalve Ledella pustulosa in the Rockall Trough, north-east Atlantic. J. Mar. Bio. Ass. Uni. King., 79: 661-671. Gage, J. D. and P. A. Tyler, 1991. Deep-sea Biology: A Natural History of Organisms at the Deep-Sea Floor. Cambridge University Press, Cambridge. Pp. i-xvi,1-504. Garrett, R. H., and C. M. Grisham, 1999. Biochemistry, 2nd edition. The Saumders College Press. USA. Pp. i-xxx, 1-1124. Gilbert, D. C., 1994. SEQAPP 1.9. A biological sequence editor and analysis program for Macintosh computers. Available from ftp.bio.indiana.edu Gonzalez, I. L., J. L. Gorski, T. J. Campen, D. J. Dorney, J. M. Erickson, J. E. Sylvester, and R. D. Schmickel, 1985. Variation among human 28S ribosomal RNA genes. Genetics, 82: 7666-7670. Grant, W. S., and R. W. Lesile, 1993. Biochemical divergence and biogeography of anglerfish of the genus Lophius (Lophiiformes). J. Zool. Lond., 231: 465-485. Hancock, J. M., and G. A. Dover, 1990. ‘ Compensatory slippage’ in the evolution of ribosomal RNA genes. Nucleic Acids Res.,18 : 5949-5954. Harrison, M. K., and B. J. Crespi, 1999. A phylogenetic test of ecomorphological adaptation in Cancer crabs. Evolution, 53 (3): 961-965. Hasegawa, M., H. Kishino, and T. Yano, 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol., 29: 170-179. Hassouna, N., B. Michot, and J-P. Bachellerie, 1984. The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes. Nucleic Acids Res., 12(8) : 3563-3583. Hillis, D. M., C. Moritz, and B. K. Mable, 1996. Molecular systematics 2nd edition. Sinauer Associates, Massachusett. USA. Holthuis, L. B., 1980. FAO species catalogue, Vol.1. Shrimps and prawns of the world. An annotates catalogue of species of interest to fisheries. FAO Fisheries Synopsis. Kim, C-G., H.-Z. Zhou, Y. Imura, O. Tominaga, Z.-J. Su, and S. Osawa, 2000. Pattern of morphological diversification in the Leptocarabus ground beetles (Coleoptera: Carabidae) as deduced from mitochondrial ND5 gene and nuclear 28S rDNA sequences. Mol. Biol. Evol., 17(1): 137-145. Keenan, C. P., P. J. F. David, and D. L. Mann, 1998. A revision of the genus Scylla de Haan, 1833 (Crustacea: Decapoda: Brachyura: Portunidae). The Raffles Bull. Zool., 46: 217-245. Knowlton, N., L. A. Weigt, L. A. Solorzano, E. K. Mills, and E. Bermingham, 1993. Divergence in proteins, mtDNA, and reproductive compatibility across the Isthmus of Panama. Science, 260: 1629-1632. Kojima, S., R. Segawa, J. Hashimoto, and S. Ohta, 1997. Molecular phylogeny of vestimenyiferans collected around Japan, revealed by the nucleotide sequences of mitochondrial DNA. Mar. Biol., 127: 507-513. Komai, T., 1999. A revision of the genus Pandalus (Crustacea : Decapoda : Caridea :Pandalidae). J. Nat. Hist., 33: 1265-1372. Kumer, P. S., K. Tamura, and M. Nei, 1993. MEGA: Molecular Evolutionary Genetics Analysis, 1.01. The Pennsylvania State University. PA. Lafay, B., A. B. Smith, and R. Christen, 1995. A combined morphological and molecular to the phylogeny of asteroids (Asteroidea: Echinodermata). Syst. Biol., 44(2): 190-208. Lee, D. A., 1990. On the Deep-sea Shrimps of Taiwan- I , Heterocarpus tricarinatus Alcock and Anderson, 1894. Bull. Tai. Fish. Res. Ins., 49: 125-137. Leslie, R. W., and W. S. Grant, 1994. Meristic and morphometric variation among anglerfish of the genus Lophius (Lophiiformes). Zool. Lond., 232: 565-584. Lewin, R., 1985. Molecules vs morphology:of mice and men. Science, 229: 743-745. Littlewood, D. T. J., 1994. Molecular phylogenetics of cupped oysters based on partial 28S rRNA gene sequences. Mol. Phyl. Evol., 3(3): 221-229. Litvaitis, M. K., and K. Rohde, 1999. A molecular test of platyhelminth phylogeny: inference from partial 28S rDNA sequences. Invert. Biol., 118: 42-56. McArthur, A. G., and B. F. Koop, 1999. Partial 28S rDNA sequences and the antiquity of hydrothermal vent endemic Gastropods. Mol. Phyl. Evol., 13(2): 255-274. Michot, B., and J. P. Bachellerie, 1987. Comparisons of large sub-unit rRNAs reveal some eukaryote-specific element of secondary structure. Biochemie, 69: 11-23. Miya, M., and M. Nishida, 1996. Molecular phylogenetic perspective on the evolution of the deep-sea fish genus Cyclothone (Stomiiforms: Gonostomatidae). Ichthy. Res., 43: 375-398. Miya, M., and M. Nishida, 1997. Speciation in the open ocean. Nature, 389: 803-804. Miya, M., and M. Nishida, 2000. Molecular systematics of the deep-sea fish genus Gomostoma (Stomiiforms: Gonostomatidae): two paraphyletic clades and resurrection of Sigmops. Copeia, 2: 378-389. Nei, M., 1987. Molecular evolutionary genetics. Columbia University Press, New York. Nunn, G. B., B. F. Theisen, B. Christensen, and P. Arctander, 1996. Simplicity-correlated size growth of the nuclear 28S ribosomal RNA D3 expansion segment in the crustacean order Isopoda. J. Mol. Evol., 42: 211-223. Palumbi, S. R., and J. Benzie, 1991. Large mitochondrial DNA differences between morphologically similar penaeid shrimp. Mol. Mar. Biol. Biotech., 1: 27-34. Pélandakis, M., D. G. Higgins, and M. Solignac, 1991. Molecular phylogeny of the subgenus Sophophora of Drosophila derived from large subunit of ribosomal RNA sequences. Genetica, 84:87-94. Posada, D., and K. A. Crandall, 1998. Modeltest : testing the model of DNA substitution. Bioinformatics, 14 (9): 817-818. Rozas J., and R. Rozas, 1999. DnaSP version 3.0: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics, 15: 174-175. Ruiz Linares, A. R., J. M. Hancock, and G. A. Dover, 1991. Secondary structure constraints on the evolution of Drosophila 28S ribosomal RNA expansion segments. J. Mol. Biol., 219: 381-390. Saitou, N., and M. Nei, 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4: 406-525. Schmitz, J., and R. F. A. Moritz, 1994. Sequence analysis of the D1 and D2 region of 28S rDNA in the hornet (Vespa crabro) (Hymenoptera, Vespinae). Ins. Mol. Biol., 3 (4): 273-277. Shank, T. M., R. A. Lutz, and R. C. Vrijenhoek, 1998. Molecular systemtics of shrimp (Decapoda: Bresiliidae) from deep-sea hydrothermal vents, I: enigmatic “small orange” shrimp from the Mid-Atlantic ridge are juvenile Rimicaris exoculata. Mol. Mar. Biol. Biotech., 7 (2): 88-96. Shank, T. M., M. B. Black, K. M. Halanych, R. A. Lutz, and R. C. Vrijenhoek, 1999. Miocene radiation of deep-sea hydrothermal vent shrimp (Caridea: Bresiliidae): evidence from mitochondrial cytochrome oxidase subunit I. Mol. Phyl. Evol., 13 (2): 244-254. Swofford, D. L., 2000. PAUP4.06b : Phylogenetic analysis using parsiomony (and other methods). Sinauer Associstes, Sounderland , Massachusetts. Tagami, D. T., and S. Barrows, 1988. Deep-sea shrimps trapping for Heterocarpus laevigatus in the Hawaiian Archipelago by a commercial fishing vessel. NOAA Tech. Memo. NMFS-SWFC-103, NMFS Honolulu Lab., 14 p. Tamura, K. and M. Nei, 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol., 10: 512-526. Tillier, S., M. Masselot, J. Guerdoux, and A. Tillier, 1994. Monophyly of major gastropod taxa tested from partial 28S rRNA sequences, with emphasis on Euthyneura and hot-vent limpets Peltospiroidea. The Naut., Suppl., 2: 122-140. Van de Peer, Y., J-M. Neefs, and R. De Wachter, 1990. Small ribosomal subunit RNA sequences, evolutionary relationships among different life forms, and mitochondrial origins. J. Mol. Evol., 30: 463-476. Vawter, L., and W. M. Brown, 1993. Rates and pattern of base change in the small subunit ribosomal RNA gene. Genetics, 134: 597-608. Wadley, V., and D. Evans, 1991. Crustaceans from the Deepwater Trawl Fisheries of Western Australia. The Fishing Industry Research and Development Committee and the Australian Service. pp. i-iv, 1-44. Wilmotte, A., Y. Van de Peer, A. Goris, S. Chapelle, R. De Baere, B. Nelissen, J-M. Neefs, G. L. Hennebert, R. De Wachter, 1993. Evolutionary relationships among higher fungi inferred from small ribosomal subunit RNA sequence analysis. Syst. Appl. Microbiol., 16: 436-444. Zardoya, R., and A. Meyer, 1996. Evolutionary relationships of the coelacanth, lungfishes, and tetrapods based on the 28S ribosomal RNA gene. Proc. Natl. Sci. Acad. USA, 93: 5449-5454.
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