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Topic I: 1. Clifford, R. D., Howell, J. B., Radford, M., and Holgate, S. T. (1989) Associations between respiratory symptoms, bronchial response to methacholine and atopy in two age groups of school children. Arch. Dis. Child. 64, 1133—1139 2. Wuthrich, B. (1989) Epidemiology of the allergic diseases: are they really on the increase? Int. Arch. Allergy Appl. Immunol. 90, 3-10 3. 氣喘照護手冊, 行政院環境保護署, 1996. 4. Janeway, C. A., Travers, P., Walport, M., and Capra, J. D. (1999) Immunobiology: The immune system in health and disease. 4th ed., p462-488 5. Barnes, P. J. (1996) Pathophysiology of asthma. Br. J. Clin. Pharmacol. 42, 3-10 6. Anderson, G. P., and Coyle, A. J. (1994) Th2 and ‘Th2-like’ cells in allergy and asthma: Pharmacological perspectives. Trends. Pharmacol. Sci. 15, 324-332 7. Scharenberg, A. M., and Kinet, J. P. (1994) Initial events in FcεRI signal transduction. J. Allergy Clin. Immunol. 94, 1142-1146 8. Marsh, D.G., Neely, J. D., and Breazeale, D. R. et al. (1994) Linkage analysis of IL-4 and other chromosome 5q31.1 markers and total serum immunoglobulin E concentrations. Science 264, 1152—5 9. Baldini, M., Lohman, I. C., Halonen, M., Erickson, R. P., Holt, P. G., and Martinez, F. D. (1999) A polymorphism in the 5’-flanking region of the CD14 gene is associated with circulating soluble CD14 levels with total serum IgE. Am. J. Respir. Cell Mol. Biol. 20, 976—983 10. Marsh, D. G., Hsu, S. H., and Roebber, M. et al. (1982) HLA-Dw2: a genetic marker for human immune response to short ragweed pollen allergen Ra 5 I Response resulting primarily from natural antigenic exposure. J. Exp. Med. 155, 1439—1451 11. Liebers, V., Sander, I., Van Kampen, V., Raulf-Heimsoth, M., Rozynek, P., and Baur, X. (1996) Overview on denominated allergens. Clin. Exp. Allergy. 26, 494-516 12. Latge, J. P., and Paris, S. (1991) The fungal spore and disease initiaton in plants and animals, in: Cole G.T., Moch H.C. (Eds.), Plenum Press, New York, p. 379—401 13. Portnoy, J., Chapman, J., Burge, H., Muieleberg, M., and Solomon, W. (1987) Epicoccum allergy: skin reaction patterns and spore/mycelium disparities recognized by IgG and IgE ELISA inhibition. Ann. Allergy 59, 39—43 14. Burge, H. A. (1989) Airborne-allergenic fungi. Immunol Allergy Clin. North Am. 9, 307—319 15. Kurup, V. P., Fink, J. N. (1993) Fungal Infection and Immunity Responses, in: Murphy, J. W., Friedman, H., Bendinelli, M. (Eds.), Plenum Press, New York, p. 393—404 16. Kurup, V. P. (1989) Hypersensitivity pneumonitis due to sensitization with thermophilic actinomycetes. Immunol. Allergy Clin. North Am. 9, 285—306 17. Kurup, V. P., and Kumar, A. (1991) Immunodiagnosis of aspergillosis. Clin. Microbiol. Rev. 4, 439 —459 18. Latge, J. P., and Paris, S. (1991) The fungal spore and disease initiaton in plants and animals, in: Cole G.T., Moch, H.C. (Eds.), Plenum Press, New York p. 379—401 19. Achatz, G., Oberkofler, H., Lechenauer, E., Simon, B., Unger, A., Kandler, D., Ebner, C., Prillinger, H., Kraft, D., and Breitenbach, M. (1995) Molecular cloning of major and minor allergens of Alternaria alternata and Cladosporium herbarum. Mol. Immunol. 32, 213—227 20. Vijay, H. M., Thaker, A. J., Banerjee, B., and Kurup, V. P. (1999) Allergens and Allergen Immunotherapy, in: Lockey R.F., Bukantz S.C. (Eds.), Marcel Dekker, Inc., New York, p. 133—154 21. Janeway, C. A., and Travers, P. (1997) Allergy and hypersensitivity, in Immunobiology : the immune system in health and disease, 3rd ed. Current Biology ; Garland Publisher, New York 22. Barnes, P. J. (1992) Asthma in adults, in Current therapy in allergy, immunology, and rheumatology., in Lichtenstein L.M., Fauci A.S. (Eds), Mosby, St. Louis, MO, 4th ed. p. 25-32 23. Greenberger, P. A. (1997) Asthma, in Allergic diseases : Diagnosis and Management, in Patterson R., Grammer C.L., Greenberger P.A., (Eds), Lippincott-Raven, New York, 5th ed. p.505-517 24. Shapiro, G. G. (1992) Childhood asthma, in Current therapy in allergy, immunology, and rheumatology. 4th ed. p. 33-38, (Lichtenstein L.M., Fauci A.S. eds.), Mosby, St. Louis, MO 25. Valenta, R., Almo, S., Ball, T., Dolecek, C., Steinberger, P., Laffer, S., Eibensteiner, P., Flicker, S., Vrtala, S., Spitauer, S., Valent, P., Denepoux, S., Kraft, D., Banchereau, J. and Lebecque, S. (1998) The immunoglobulin E-allergen interaction: a target for therapy of type I allergic diseases. Int. Arch. Allergy Immunol. 116, 167-176 26. Chretien, I., Pene, J., Briere, F., De Waal Malefijt, R., Rousset, F., De Vries, J. E. (1990) Regulation of human IgE synthesis. Eur. J. Immunol. 20, 243-251 27. Thompson, R. A., and Kumararatne, D. S. (1989) Hyper-IgE syndrome and H2-receptor blockade. Lancet 2, 630 28. Creticos, P. S. (1992) Immunotherapy with allergens. J. Am. Med. Assoc. 268, 2834-2839 29. Bousquet, J., Lockey, R., Malling, H. J, Alvarez-Cuesta, E., Canonica, G. W, Chapman, M. D., Creticos, P. J, Dayer, J. M., Durham, S. R., Demoly, P., Goldstein, R. J., Ishikawa, T., Ito, K., Kraft, D., Lambert, P. H., Lowenstein, H., Muller, U., Norman, P. S., Reisman, R. E., Valenta, R., Valovirta, E., and Yssel, H.(1998) Allergen immunotherapy: therapeutic vaccines for allergic diseases. Ann. Allergy Asthma Immunol. 81, 401-405 30. Durham, S. R., Walker, S. M., Varga, E. M., Jacobson, M. R., O’Brien, F., Noble, W., Till, S. J., Hamid, Q. A., and Nouri-Aria, K. T. (1999) Long-term clinical efficacy of grass-pollen immunotherapy. N. Engl. J. Med. 34, 468-475 31. La, Rosa. M., Ranno, C., Andre, C., Carat, F., Tosca, M. A., and Canonica, G. W. (1999) Double-blind placebo-controlled evalution of sublingual-swallow immunotherapy with standardized Parietaria judaica extract in children with allergic rhinoconjunctivitis. J. Allergy. Clin. Immunol. 104, 425-432 32. Passalacqua, G., Albano, M., Riccio, A., Fregonese, L., Puccinelli, P., Parmiani, S., and Canonica, G. W. (1999) Clinical and immunologic effects of a rush sublingual immunotherapy to Parietaria species: A double-blind, placebo-controlled trial. J. Allergy ClinImmunol. 104, 964-968 33. Raz, E., Tighe, H., Sato, Y., Corr, M., Dudler, J. A., Roman, R., Swain, S. L., Spiegelberg, H. L., and Carson, D. A. (1999) Preferential induction of a Th1 immune response and inhibition of specific IgE antibody formation by plasmid DNA immunization. Proc. Natl. Acad. Sci. USA 93, 5141-5145 34. Hsu, C. H., Chua, K. Y., Tao, M. H., Lai, Y. L., Wu, H. D., Huang, S. K., and Hsieh, K.H. (1996) Immunoprophylaxis of allergen-induced immunoglobulin E synthesis and airway hyperresponsiveness in vivo by genetic immunization. Nature. Med. 2, 540-544 35. Erb, K. J., Holloway, J. W., Sobeck, A., Moll, H., and Le, Gros. G. (1998) Infection of mice with Mycobacterium bovis-bacillus Calmette-Gue´rin (BCG) suppresses allergen-induced airway eosinophilia. J. Exp. Med. 187, 561-569 36. Su, N. Y., Yu, C. J., Shen, H. D., Pan, F. M. and Chow, L. P. (1999) Pen c 1, a novel enzymic allergen protein from Penicillium citrinum. Eur. J. Biochem. 261, 115-123 37. Chow, L. P., Su, N. Y., Yu, C. J., Chiang, B. L. and Shen, H. D. (1999) Identification and expression of Pen c 2, a novel allergen from Penicillium citrinum. Biochem. J. 341, 51-59 38. Shen, H. D., Liaw, S. F., Lin W. L., Ro, L.H., Yang H. L. and Han S. H. (1995) Molecular cloning of cDNA coding for the 68 kDa allergen of Penicillium notatum using MoAbs. Clin. Exp. Allergy 25, 350-356 39. Shen, H. D., Lin, W. L., Tsai, J. J. Liaw, S. F. and Han, S. H. (1996) Allergenic components in three different species of Penicillium: crossreactivity among major allergens. Clin. Exp. Allergy 26, 444-451 40. Chow, L. P., Chiou, S. H., Hsiao M. C., Yu, C. J. and Chiang, B. L. (2000) Characterization of Pen n 13, a major allergen from the mold Penicillium notatum. Biochem. Biophys. Res. Comm. 269, 14-20. 41. Yu, C. J., Chiou, S. H., Lai, W. Y., Chiang, B. L. and Chow, L. P. (1999) Characterization of a novel allergen, a major IgE-binding protein from Aspergillus flavus, as an alkaline serine protease. Biochem. Biophys. Res. Comm. 261, 669-675 42. Chou, H., Lin, W. L., Tam, M. F., Wang, S. R., Han, S. H. and Shen, H. D. (1999) Alkaline serine proteinase is a major allergen of Aspergillus flavus, a prevalent airborne Aspergillus species in the Taipei area. Int. Arch. Allergy Immunol. 119, 282-290 43. Shen, H. D., Lin W. L., Tam, M. F., Wang S. R., Tzean S. S., Huang, M. H. and Han, S. H. 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(1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162, 156-159 48. Frohman, M. A., Dush, M. K. and Martin, G. R. (1988) Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer. Proc. Natl. Acad. Sci. (USA) 85, 8998-9002 49. Kyte, J., and Doolittle, R. F. (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157, 105-132 50. Frederick, G. D., Rombouts, P. and Buxton, F. P. (1993) Cloning and characterization of pepC, a gene encoding a serine protease from Aspergillus niger. Gene 125, 57-64 51. Moehle, C. M., Tizard, R., Lemmon, S. K., Smart, J. and Jones, E. W. (1987) Protease B of the lysosomelike vacuole of the yeast Saccharomyces cerevisiae is homologous to the subtilisin family of serine proteases. Mol. Cell. Biol. 7, 4390-4399 52. Moehle, C. M., Dixon, C. K. and Jones, E. W. (1989) Processing pathway for protease B of Saccharomyces cerevisiae. J. Cell Biol. 108, 309-325 53. Shinde, U., and Inouye, M. (1994) The structural and functional organization of intramolecular chaperones: the N-terminal propeptides which mediate protein folding. J. Biochem. (Tokyo). 115, 629-636 54. Burge, H. A. (1985) Fungus allergens. Clin. Rev. Allergy 3, 319-329 55. Beaumont, F., Kauffman, H. F., Sluiter, H. J. and De Vries, K., (1985) Sequential sampling of fungal air spores inside and outside the homes of mould-sensitive, asthmatic patients: a search for a relationship to obstructive reactions. Ann. Allergy 55, 740-746 56. Kurup, V. P., Shen, H. D., and Banerjee, B. (2000) Respiratory fungal allergy. Microbes. Infect. 2, 1101-1110 57. Hattori, T., Ichihara, S., and Nakamura, K. (1987) Processing of a plant vacuolar protein precursor in vitro. Eur. J. Biochem. 166, 533-53 58. Zhu, X., Ohta, Y., Jordan, F., and Inouye, M. (1989) Pro-sequence of subtilisin can guide the refolding of denatured subtilisin in an intermolecular process. Nature (London) 339, 483-484 59. Inouye, M. (1991) Intramolecular chaperone: the role of the pro-peptide in protein folding. Enzyme. 45, 314-21 60. Backman, A., Belin, L., Dreborg, S., Halvorsen, R., Malling, H. J. and Weeke, B. (1991) Standardization of allergenic preparations. Allergy 46, 81-84 61. Platts-Mills, T. A. E., and Chapman, M. D. (1991) Allergen standardization. J. Allergy Clin. Immunol. 87, 621-625 62. Hoyne, G., Bourne, T., Kristensen, N., Hetzel, C., and Lamb, J. (1996) From epitopes to peptides to immunotherapy. Clin. Immunol. Immunopathol. 80, Suppl. 23—30 63. Chapman, M. D. (1991) Use of nonstimulatory peptides: a new strategy for immunotherapy? J. Allergy Clin. Immunol. 88, 300-302 64. Ball, T., Vrtala, S., Sperr, W. R., Valent, P., Susani, M., Kraft, D., and Valenta, R. (1994) Isolation of an immunodominant IgE hapten from an epitope expression cDNA library. J. Biol. Chem 269, 28323-28328 65. Yu, C. J., Chen, Y. M., Su, S. N., Forouhar, F., Lee, S. H., and Chow, L. P. (2002) Molecular and immunological characterization and IgE epitope mapping of Pen n 18, a major allergen of Penicillium notatum. Biochem. J. 363, 707-715 66. Siezen, R. J., Vos, W. M., Leunissen, J. A. M. and Dijkstra, B. W. (1991) Homology modelling and protein engineering strategy of subtilases, the family of subtilisin-like serine proteinases. Protein Eng. 4, 719-737 67. Berzofsky, J. A. (1985) Intrinsic and extrinsic factors in protein antigenic structure. Science 229, 932-940 Topic II: 1. Licorish, K., Novey, H. S., Kozak, P., Fairshter, R. D., and Wilson, A. F. (1985) Role of Alternaria and Penicillium spores in the pathogenesis of asthma. J. Allergy Clin. Immunol. 76, 819-825 2. Bennett, J. E. (1990) in Principles and practice of infectious disease (Mandell, G. L., Douglas R. 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Allergy 26, 444-451 8. Chow, L. P., Chiou, S. H., Hsiao M. C., Yu, C. J. and Chiang, B. L. (2000) Characterization of Pen n 13, a major allergen from the mold Penicillium notatum. Biochem. Biophys. Res. Comm. 269, 14-20 9. Yu, C. J., Chiou, S. H., Lai, W. Y., Chiang, B. L. and Chow, L. P. (1999) Characterization of a novel allergen, a major IgE-binding protein from Aspergillus flavus, as an alkaline serine protease. Biochem. Biophys. Res. Comm. 261, 669-675 10. Chou, H., Lin, W. L., Tam, M. F., Wang, S. R., Han, S. H. and Shen, H. D. (1999) Alkaline serine proteinase is a major allergen of Aspergillus flavus, a prevalent airborne Aspergillus species in the Taipei area. Int. Arch. Allergy Immunol. 119, 282-290 11. Kurup V. P., Shen, H. D. and Banerjee B. (2000) Respiratory fungal allergy. Microbes Infect. 2, 1101-1110 12. Chow, L. P., Fukaya, N., Miyatake, N., Horimoto, K., Sugiura, Y., Tabuchi, K., Ueno, Y. and Tsugita, A. (1995) Resolution of Fusarium sporotrichioides proteins by two-dimensional polyacrylamide gel electrophoresis and identification by sequence Homology comparison in protein data base. J. Biomed. Sci. 2, 343-352 13. Smith, P. K., Krohn, R. I., Hermanson, G. T., Mallia, A. K., Gartner, F. H, Provenzano, M. D., Fujimoto, E. K., Goeke, N. M., Olson, B. J., and Klenk, D. C (1985) Measurement of protein using bicinchoninic acid. Anal. Biochem. 150, 76-85 14. Chomczynski, P., and Sacchi, N. (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162, 156-159 15. Frohman, M. A., Dush, M. K., and Martin, G. R. (1988) Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer. Proc. Natl. Acad. Sci. (USA) 85, 8998-9002 16. Tatsumi, H., Ogawa, Y., Murakami, S., Ishida, Y., Murakami, K., Masaki, A., Kawabe, H., Arimura, H., Nakano E., Motai, H. (1989) A full length cDNA clone for the alkaline protease from Aspergillus oryzae: structural analysis and expression in Saccharomyces cerevisiae. Mol. Gen. Genet. 219, 33-38 17. King, T. P, Hoffman, D., Lowenstein, H., Marsh, D.G., Platts-Mills, T. A. E., and Thomas, W. (1994) Allergen nomenclature. WHO/IUIS Allergen Nomenclature Subcommittee. Int. Arch. Allergy. Immunol. 105, 224-233 18. Jaton-Ogay, K., Suter, M., Crameri, R. Falchetto, R., Fatif, A. and Monod, M. (1992) Nucleotide sequence of a genomic and a cDNA clone encoding an extracellular alkaline protease of Aspergillus fumigatus. FEMS Microbiol. Lett. 71, 163-168 19. Wells, J. A., Ferrari, E., Henner, D. J., Estell, D. A., and Chen, E. Y. (1983) Cloning, sequencing, and secretion of Bacillus amyloliquefaciens subtilisin in Bacillus subtilis. Nucleic Acids Res. 11, 7911-7925 20. 氣喘照護手冊, 行政院環境保護署, 1996. 21. Wuthrich B. (1989) Epidemiology of the allergic diseases: are they really on the increase? Int. Arch. Allergy Appl. Immunol. 90, 3-10 22. Portnoy, J., Chapman, J., Burge, H., Muieleberg, M. and Solomon, W. (1989) Epicoccum allergy: skin reaction patterns and spore/mycelium disparities recognized by IgG and IgE ELISA inhibition. Ann. Allergy 59, 39—43 23. Zhu, X., Ohta, Y., Jordan, F., and Inouye, M. (1989) Pro-sequence of subtilisin can guide the refolding of denatured subtilisin in an intermolecular process. Nature (London) 339,483-484 24. Inouye, M. (1991) Intramolecular chaperone: the role of the pro-peptide in protein folding. Enzyme 45,314-321 25. Hattori, T., Ichihara, S. and Nakamura, K. (1987) Processing of a plant vacuolar protein precursor in vitro. Eur. J. Biochem. 166,533-538 26. Mueller, G. A., Benjamin, D. C. and Rule, G. S. (1998) Tertiary structure of the major house dust mite allergen Der p 2: sequential and structural homologies. Biochemistry 37, 12707-12714 27. Platts-Mills, T. A., Wheatley, L. M. and Aalberse, R. C. 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Biol. 12, 369-378 32. King, C., Brennan, S., Thompson, P. J. and Stewart, G. A. Dust mite proteolytic allergens induce cytokine release from cultured airway epithelium. J. Immunol. 161, 3645-3651 33. Robinson, B. W., Venaille, T. J., Mendis, A. H. and McAleer, R. Allergens as proteases: an Aspergillus fumigatus proteinase directly induces human epithelial cell detachment. J. Allergy Clin. Immunol. 86, 726-731 34. Hein J. (1990) Unified approach to alignment and phylogenies. Methods Enzymol. 183, 626-645
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