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研究生:李盈霖
研究生(外文):Ying-Lin Lee
論文名稱:以多套式PCR快速鑑定陽性血瓶之酵母菌
論文名稱(外文):Rapid Identification of Yeasts in Positive Blood Cultures by a Multiplex PCR Method
指導教授:陳建華陳建華引用關係張長泉張長泉引用關係
指導教授(外文):Jiann-Hwa ChenTsung-Chain Chang
學位類別:碩士
校院名稱:國立中興大學
系所名稱:生命科學院碩士在職專班
學門:生命科學學門
學類:生物學類
論文種類:學術論文
論文出版年:2003
畢業學年度:91
語文別:英文
論文頁數:89
中文關鍵詞:多套式PCR
外文關鍵詞:multiplex PCR
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本研究是使用多套式PCR方法,以1個通用的反向引子和設計的8個具有種特異性的正向引子,快速鑑定臨床上陽性血液培養最常見的8種酵母菌。這8個種特異性引子設計的位置是位於核醣體DNA內轉錄區(internal transcribed spacer region, ITS)1和2,而通用性的引子則位於26S核醣體基因。這8種酵母菌經由多套式PCR方法所放大出來的DNA產物長度分別為:Candida lusitaniae (116 bp), C. parapsilosis (126 bp), C. tropicalis (149 bp), C. guilliermondii (185 bp), C. albicans (402~403 bp), C. krusei (475 bp), Cryptococcus neofonmans (516 bp), 和C. glabrata (631~632 bp),而這些PCR產物經由膠體電泳即可有效將它們分離。以本法測試上述8種酵母菌的臨床分離共248株純菌,所獲得的敏感度(sensitivity)為100%(248/248),另外測試其他酵母菌及黴菌純菌(含36屬、71種、168株),所獲得的特異性(specificity)為98.2%(165/168)。再以此方法實際測試234個陽性血瓶(237分離株),這些菌種(菌株數)之分佈如下:C. albicans (121), C. tropicalis (50), C. glabrata (29), C. parapsilosis (20), Cryptococcus neoformans (6), C. krusei (4), C. guilliermondii (3), 及C. lusitaniae (1),和其他3種臨床較少見的酵母菌。除了這3種少見菌種沒有被鑑定(unidentified)出來,上述8種目標酵母菌皆被正確的鑑定出來,實驗結果顯示敏感度為98.7%。本實驗方法是一個簡單且快速的方法,它能在6小時內鑑定陽性血瓶中約99%的酵母菌菌株。

A multiplex PCR method using one universal and eight species-specific primers was developed to rapidly identify eight species of yeasts commonly found in positive blood cultures. The species-specific primers were designed from the internal transcribed spacer (ITS) regions 1 and 2 of the rRNA gene, whereas the universal primer was located at the 26S rRNA gene. The amplicon sizes of the eight yeast species were as follows: C. lusitaniae (116 bp), C. parapsilosis (126 bp), C. tropicalis (149 bp), C. guilliermondii (185 bp), C. albicans (402 to 403 bp), C. krusei (475 bp), Cryptococcus neoformans (516 bp), and C. glabrata (631 to 632 bp). The PCR products could be effectively separated by gel electrophoresis. By testing 248 clinical isolates of the eight species, a sensitivity of 100% was obtained. However, a specificity of 98.2% was obtained with 168 strains (71 species representing 36 genera) of other pure cultures of yeast and mold tested. The method was then used to analyze 234 positive blood cultures (237 isolates), from which the following species (strain number) were isolated: C. albicans (121), C. tropicalis (50), C. glabrata (29), C. parapsilosis (20), Cryptococcus neoformans (6), C. krusei (4), C. guilliermondii (3), C. lusitaniae (1), and other minor species (3). Except the three minor species, all isolates of the eight target species were identified by the multiplex PCR, resulting in a test sensitivity of 98.7% (234/237). The present method is simple, rapid, and approximately 99% of yeasts in positive blood cultures could be identified within 6 h.

中文摘要 -------------------------------------------------------------------- I
英文摘要 -------------------------------------------------------------------- II
誌謝 -------------------------------------------------------------------------- III
目錄 -------------------------------------------------------------------------- IV
表目錄 ----------------------------------------------------------------------- VI
圖目錄 ----------------------------------------------------------------------- VII
第一章 緒論 ----------------------------------------------------------------- 01
1.1 前言------------------------------------------------------------------- 01
1.2 真菌的特性與分類分類------------------------------------------- 01
1.3 醫學上真菌感染所引起的病症---------------------------------- 04
1.4 酵母菌之院內感染與治療---------------------------------------- 07
1.5 酵母菌之鑑定方法------------------------------------------------- 10
1.6 研究目的與動機---------------------------------------------------- 13
1.7 研究架構------------------------------------------------------------- 15
第二章 實驗方法與材料--------------------------------------------------- 17
2.1 實驗原理------------------------------------------------------------- 17
2.1.1 聚合酶連鎖反應(polymerase chain reaction)---------- 17
2.1.2 瓊脂電泳(AGE) -------------------------------------------- 18
2.1.3 聚丙醯胺凝膠電泳(PAGE)------------------------------- 19
2.1.4 定序分析(DNA sequencing)------------------------------ 19
2.2 實驗材料與方法---------------------------------------------------- 21
2.2.1 實驗藥品----------------------------------------------------- 21
2.2.2 實驗藥品配製----------------------------------------------- 23
2.2.3 實驗設備----------------------------------------------------- 28
2.2.4 真菌和細菌菌種來源-------------------------------------- 31
2.2.5 DNA萃取--------------------------------------------------- 32
2.2.6 內轉錄區(ITS)1和2的放大-------------------------- 35
2.2.7 多套式PCR的引子設計---------------------------------- 36
2.2.8 多套式PCR-------------------------------------------------- 37
2.2.9 血液培養----------------------------------------------------- 38
2.2.10 多套式PCR的偵測極限---------------------------------- 38
2.2.11 膠體電泳----------------------------------------------------- 38
2.2.12 核甘酸序列資料庫登錄號碼----------------------------- 39
第三章 結果------------------------------------------------------------------ 40
3.1 ITS區域序列相似性分析----------------------------------------- 40
3.2 多套式PCR產物的長度------------------------------------------ 40
3.3 多套式PCR的偵測極限------------------------------------------ 41
3.4 以多套式PCR臨床分離株的純培養--------------------------- 41
3.5 其他菌株------------------------------------------------------------- 42
3.6 陽性血瓶中酵母菌之鑑定---------------------------------------- 42
第四章 討論 ----------------------------------------------------------------- 44
參考文獻 --------------------------------------------------------------------- 48

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