參考文獻
[1] 王培銘,「由簡而繁的系統生物學」,生物資源保存及研究簡訊,第十七卷,第三期,民國九十三年。[2] 徐英哲,「以基因表現相關性及轉錄因子結合區重建調控網路」,國立交通大學資訊科學所論文,民國九十二年。[3] 蔡光曜,「全域/局部最適化方法應用於基因調控網路模式之參數估計」,國立中正大學化學工程研究所碩士論文,民國九十三年。[4] Alves, R. and Savageau, M.A., 2000, “Systemic Properties of Ensembles of Metabolic Networks: Application of Graphical and Statistical Methods to Simple Unbranched Pathways”, Bioinformatics, 16, 534–547.
[5] Chiou, J.P., and Wang, F.S., 1998, “A Hybrid Method of Differential Evolution with Application to Optimal Control Problems of a Bioprocess System”, IEEE Conference On Evolutionary Computation, Anchorage, 627-631.
[6] Claverie, J.M., 1999, “Computational Methods for The Identification of Differential and Coordinated Gene Expression”, Human Molecular Genetics, 8, 1821–1832.
[7] Hlavacek, W.S., and Savageau, M.A., 1996, “Rules for Coupled Expression of Regulatory and Effector Genes in Inducible Circuits”, Journal of Molecular Biology, 255, 121-139.
[8] Hood, L., 2002, “A Personal View of Molecular Technology and How It Has Changed Biology”, Journal of Proteome Research, 1, 399-409.
[9] Kikuchi, S., Tominaga, D., Arita, M., Takahashi, K., and Tomita, M., 2003, “Dynamic Modeling of Genetic Networks Using Genetic Algorithm and S-system”, Bioinformatics, 19, 643-650.
[10] Niehrs, C., and Pollet, N., 1999, “Synexpression Groups in Eukaryotes”, Nature, 402, 483–487.
[11] Savageau, M.A., 1976, “Biochemical Systems Analysis: A Study of Function and Design in Molecular Biology”, Addison-Wesley, Reading, MA.
[12] Schuster, S., Fell, D.A., and Dandekar, T., 2000, “A General Definition of Metabolic Pathway Useful for Systematic Organization and Analysis of Complex Metabolic Networks”, Nature Biotechnology, 18, 326-332.
[13] Shmulevich, I., Dougherty, E.R., Kim, S., and Zhang, W., 2002, “Probabilistic Boolean Networks: A Rule-based Uncertainty Model for Gene Regulatory Networks”, Bioinformatics, 18, 261-274.
[14] Silvescu, A., and Honavar, V., 2001, “Temporal Boolean Network Models of Genetic Networks and Their Inference from Gene Expression Time Series”, Complex Systems, 13, 54-59.
[15] Soinov, L.A., Krestyaninova, M.A., and Brazma, A., 2003, “Towards Reconstruction of Gene Networks from Expression Data by Supervised Learning”, Genome Biology, 4, R6.
[16] Sontag, E., Kiyatkin, A., and Kholodenko, B.N., 2004, “Inferring Dynamic Architecture of Cellular Networks Using Time Series of Gene Expression, Protein and Metabolite Data”, Bioinformatics, 20, 1877-1886.
[17] Tominaga, D., and Okamoto, M., 1998, “Design of Canonical Model Complex Nonlinear Dynamics’, In Proceeding of International Conference on Computer Applications in Biotechnology, 85-90.
[18] Tominaga, D., Koga, N., and Okamoto, M., 2000, “Efficient Numerical Optimization Algorithm Based on Genetic Algorithm for Inverse Problem”, In Proceeding of the Genetic and Evolutionary Computation Conference, 251-258.
[19] Van Someren, E.P., Wessels, L.F.A., and Reinders M.J.T., 2000, “Linear Modeling of Genetic Networks from Experimental Data”, Intelligent Systems for Molecular Biology, 8, 355-366.
[20] Voit, E.O., 2000, “Computational Analysis of Biochemical Systems: A Practical Guide for Biochemists and Molecular Biologists”, Cambridge University Press, Cambridge, U.K.
[21] Voit, E.O. and Radivoyevitch, T., 2000, “Biochemical Systems Analysis of Genome-wide Expression Data”, Bioinformatics, 16, 1023–1037.
[22] Voit, E.O., and Almeida, J., 2004, “Decoupling Dynamics Systems for Pathway Identification from Metabolic Profiles”, Bioinformatics, 20, 1670-1681.