中文摘要 I
Abstract II
誌謝 III
Contexts IV
List of Figure V
Chapter 1 Introduction 1
1.1 Motivation 1
1.2 Related Work 2
Chapter 2 Background 4
2.1 CUDA Overview 4
2.2 SGCP Overview 6
2.3 Molecular Dynamic Simulation 9
Chapter 3 Implementation On GPU 12
3.1 Tile-based method 12
3.2 Implementation Details 14
Chapter 4 Implementation On SGCP 18
4.1 The Relation Among Computers 18
4.2 Atom Partition 21
Chapter 5 Evaluation 27
5.1 Simulation Setting 27
5.2 Experimental Results 30
Chapter 6 Conclusion and Future Works 34
6.1 Conclusion 34
6.2 Future Works 34
Reference 35
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