|
49
文獻參考
Aderem, A., and D. M. Underhill (1999) Mechanisms of phagocytosis
In macrophages. Annual Review of Immunology 17:593–623
Attoui, H., F. Billoir, P. Biagini, P.de Micco, and X. de Lamballerie (2000)
Complete sequence determination and genetic analysis of Banna
virus and Kadipiro virus: proposal for assignment to a new genus
(Seadornavirus) within the family Reoviridae. Journal of General
Virology 81: 1507–1515
Bucci, C., P. Thomsen, P. Nicoziani, J. McCarthy, and B.van Deurs.
(2000) Rab7: a key to lysosome biogenesis. Molecular Biology of the
Cell 11: 467–480
Corradetti, M. N., and K. L. Guan (2006) Upstream of the mammalian target
of rapamycin: do all roads pass through mTOR? Oncogene 25(48):
6347-6360
Canelle, L., C. Pionneau, A. Marie, J. Bousquet, J. Bigeard, D. Lutomski, T.
Kadri, M. Caron, and R. Joubert-Caron (2004) Automating proteome
analysis: improvements in throughput, quality and accuracy of protein
identification by peptide mass fingerprinting. Rapid Communications
in Mass Spectrometry 18(23): 2785-2794
Colombo, M.I. (2005) Pathogens and autophagy: subverting to survive. Cell
Death and Differentiation 12(l2): 1481–1483
Djavaheri, M. M, M. Amelotti, J. Mathieu, F. Besançon, C. Bauvy,
S.Souquère, G. Pierron, and P. Codogno (2006) NF-kappaB
activation represses tumor necrosis factor-alpha-induced autophagy.
The Journal of Biological Chemistry 281(41): 30373-30382
Das, R., G. Mitra, B. Mathew, C. Ross, V. Bhat, and A. K. Mandal (2013)
Automated Analysis of Hemoglobin Variants Using NanoLC-MS and
Customized Databases 12(7): 3215-3222
50
E s c l a t i n e , A . , M . C h a u m o r c e l , a n d P . C o d o g n o
(2009) Macroautophagy Signaling and Regulation. Current Topics in
M i c r o b i o l o g y a n d I m m u n o l o g y . 3 3 5 : 3 3 - 7 0
Efeyan, A., and D. M. Sabatini (2010) mTOR and cancer: many loops in one
pathway. Current Opinion in Cell Biology. 22(2): 169–176
Facchinetti, V., W. Ouyang, H. Wei, N. Soto, A. Lazorchak, C. Gould, C.
Lowry, A. C. Newton, Y. Mao, R. Q. Miao, W. C. Sessa, J. Qin, P.
Zhang, B. Su, and E. Jacinto (2008) The mammalian target of
rapamycin complex 2 controls folding and stability of Akt and
prote in k inas e C. The EM BO J o ur na l 27 : 1932– 194 3
Fahey, J. E., and J. F. Crawley (1954) Studies On Chronic Respiratory
D i s e a s e o f C h i c k e n s I I I . E g g T r a n s m i s s i o n o f A .
Pleuropneumonia-Like Organism. Canadian journal of comparative
medicine and veterinary science 18(3): 67–75
Fahey, J.E., and J.F. Crawley (1954) Studies on chronic respiratory
disease of chickens II. Isolation of a virus. Canadian Journal of
Comparative Medicine and Veterinary Science. 18: 13–21
Fujita, N., T. Itoh, H. Omori, M. Fukuda, T. Noda, and T. Yoshimori
(2008) The Atg16L complex specifies the site of LC3 lipidation for
membrane biogenesis in autophagy. Molecular Biology of the
Cell. 19(5): 2092–2100
Gomatos, P. J., I. Tamm, S. Dales, and R. M. Franklin (1962) Reovirus type
3: physical characteristics and interaction with L cells. Virology
17: 441-454
Guneratne, J. R., R. C. Jones, and K. Georgiou (1982) Some observations
on the isolation and cultivation of avian reoviruses. Avian
Pathology. 11: 453-462
51
Grande, A., and J. Benavente (2000) Optimal conditions for the growth,
purifcation and storage of the avian reovirus S1133. Journal of
Virological Methods 85: 43-54
Hsu, J. L., S. Y. Huang, N. H. Chow, and S. H. Chen (2003) Stable-isotope
dimethyl labeling for quantitative proteomics. Analytical Chemistry
75(24): 6843-6852
Hieronymus, D. R., P. Villegas, and S.H. Kleven (1983) Identification and
serological differentiation of several reovirus strains isolated from
chickens with suspected malabsorption syndrome. Avian Diseases
27(1): 246-254
Huynh, K.K., E.L. Eskelinen, C.C. Scott, A. Malevanets, P. Saftig, and S.
Grinstein (2007) LAMP proteins are required for fusion of lysosomes
with phagosomes. The EMBO Journal. 26(2): 313–324.
Huang, J., and D. J. Klionsky (2007) Autophagy and human disease.
Cell Cycle 6(15): 1837-1849.
He, C. and D.J. Klionsky (2009) Regulation mechanisms and signaling
pathways of autophagy. Annual Review of Genetics. 43: 67-93
Itakura, E., C. Kishi, K. Inoue, and N. Mizushima (2008) Beclin 1 forms two
distinct phosphatidylinositol 3-kinase complexes with mammalian
Atg14 and UVRAG. Molecular Biology of the Cell. 19: 5360–5372
Jiang, H., D. Cheng, W. Liu, J. Peng, and J. Feng (2010) Protein kinase C
inhibits autophagy and phosphorylates LC3. Biochemical and
Biophysical Research Communications. 395(4): 471-476
Jager, S., C. Bucci, I. Tanida, T. Ueno, E. Kominami, P. Saftig, and E. L.
Eskelinen (2004) Role for Rab7 in maturation of late autophagic
vacuoles. Journal of Cell Science 117(Pt 20): 4837- 4848
52
Klionsky, D. J., A. M. Cuervo, and P. O. Seglen (2007) Methods for
monitoring autophagy from yeast to human. Autophagy 3(3):
181-206
Kirk in, V. , D. G. McEwan, I. Novak, and I. Dikic (2009) A
Role for Ubiquitin in Selective Autophagy. Molecular Cell.
34(3): 259-269
Kimura, S., T. Noda, and T. Yoshimori (2007) Dissection of the
autophagosome maturation process by a novel reporter protein,
tandem fluorescent-tagged LC3. Autophagy. 3(5): 452-60
Kabeya, Y., T. Kawamata, K. Suzuki, and Y.Ohsumi (2007) Cis1/Atg31 is
required for autophagosome formation in Saccharomyces cerevisiae.
Biochem. Biochemical and Biophysical Research Communications.
356(2): 405-410
Klionsky, D. J. (2005) The molecular machinery of autophagy: unanswered
questions. Journal of Cell Science. 118(Pt 1): 7-18
Kettman, J. R., J. R. Frey, and I. Lefkovits (2001)Proteome, transcriptome and
genome: top down or bottom up analysis? Biomolecular Engineering
18(5):207-212
Kibenege, F. S. B., and G. E. Wilcox (1983) Tenosynovitis in chickens.
Australian Veterinary Journal 53: 431-443
Kristensen, A. R, S. Schandorff, M. Hoyer-Hansen, M. O. Nielsen, M.
Jaattela, J. Dengjel, and J. S. Andersen (2008) Ordered organelle
degradation during starvation-induced autophagy. Molecular and
Cellular Proteomics 7(12): 2419-2428.
Longatti, A., and S. A. Tooze (2009) Vesicular trafficking and autophagosome
formation. Cell Death and Differentiation 16:956–965
Lee, J.W., S. Park, Y. Takahashi, and H.G. Wang (2010) The Association of
AMPK with ULK1 Regulates Autophagy. PLoS ONE. 5(11): e15394
53
Laplante, M., and D. M. Sabatini (2009b) mTOR signaling at a glance.
Journal of Cell Science.122: 3589-3594
Levine, B., and G. Kroemer (2008) Autophagy in the pathogenesis of
disease. Cell 132(1): 27-42
Laplante, M., and D. M. Sabatini (2011) mTOR Signaling. Cold Spring
Harbor Perspectives in Biology. 4(2). pii: a011593
Mizushima, N., T. Yoshimori, B. Levine (2010) Methods in mammalian
autophagy research. Cell 140(3): 313-326
Majeski, A. E., and J. F. Dice (2004) Mechanisms of chaperone-mediated
autophagy. The International Journal of Biochemistry and Cell
Biology. 36(12): 2435-2444
Mizushima, N., A. Kuma, Y. Kobayashi, A. Yamamoto, M. Matsubae, T.
T a k a o , T. N a t s u m e , Y. O h s u m i , a n d T. Yo s h i m o r i
(2003) Mouse pg16L, a novel WD-repeat protein, targets to the
autophagic isolation membrane with the Apg12-Apg5 conjugate.
Journal of Cell Science. 116(Pt 9): 1679-88
Mizushima, N., A. Yamamoto, M. Hatano, Y. Kobayashi, Y. Kabeya, K.
Suzuki, T. Tokuhisa, Y. Ohsumi, and T. Yoshimori (2001) Dissection
of autophagosome formation using Apg5-deficient mouse embryonic
stem cells. The Journal of Cell Biology. 152(4): 657-68
Mizushima, N., B. Levine, A. M. Cuervo, and D. J. Klionsky (2008)
Autophagy fights disease through cellular self-digestion. Nature.
451:1069-1075
Mertens, P., (2004) The dsRNA viruses. Virus Research. 101(1): 3-13
Marsh., M, and H. T. McMahon (1999) The structural era of endocytosis.
Science. 285(5425): 215-220
54
M eres s e, S., J. P. Gorve l, and P. Cha vr ier ( 1995) T he rab7
GTPase resides on a vesicular compartment connected to lysosomes.
J o u r n a l o f C e l l S c i e n c e . 1 0 8 ( P t 1 1 ) : 3 3 4 9 - 3 3 5 8
Marzella, L., J. Ahlberg, and H. Glaumann (1981) Autophagy, heterophagy,
microautophagy and crinophagy as the means for intracellular
degradation. Virchows Arch B Cell Pathol Incl Mol Pathol. 36(2-3):
219-234
Mortimore, G.E., B.R. Lardeux, and C. E. Adams (1988) Regulation of
microautophagy and basal protein turnover in rat liver. Effects of
short-term starvation. The Journal of Biological Chemistry.
263(5): 2506-2512.
Mizushima, N., T. Yoshimori, and B. Levine (2004) Methods in Mammalian
Autophagy Research. Cell. 140(3): 313-326
Mazzarino, M., X. de la Torre, R. Di Santo, I. Fiacco, F. Rosi, and F. Botre
(2010) Mass spectrometric characterization of tamoxifene metabolites
in human urine utilizing different scan parameters on liquid
chromatography/tandem mass spectrometry. Rapid Communications in
Mass Spectrometry 24(6): 749-760
Nakatogawa, H., Y. Ichimura, and Y. Ohsumi (2007) Atg8, a ubiquitin-like
protein required for autophagosome formation, mediates membrane
tethering and hemifusion. Cell. 130(1): 165-178
Mizushima, N., Y. Ohsumi, and T. Yoshimori (2002) Autophagosome
formation in mammalian cells. Cell Structure and Function 27(6):
421-429
Nice, D. C., T. K. Sato, P. E. Stromhaug, S. D. Emr, and D. J. Klionsky (2002)
Cooperative binding of the cytoplasm to vacuole targeting pathway
proteins, Cvt13 and Cvt20, to phosphatidylinositol 3-phosphate at the
pre-autophagosomal structure is required for selective autophagy. The
Journal of Biological Chemistry. 277(33): 30198-30207
55
Obara, K., T. Sekito, K. Niimi, and Y. Ohsumi (2008) The Atg18-Atg2
c o mp l e x i s r e c r u i t e d t o a u t o p h a g i c m e m b r a n e s v i a
phosphatidylinositol 3-phosphate and exerts an essential function.
The Journal of Biological Chemistry. 283(35): 23972-23980
Pankiv, S., T. H. Clausen, T. Lamark, A. Brech, J. A. Bruun, H. Outzen,
Overvatn A, G. Bjorkoy, and T. Johansen (2007) p62/SQSTM1
binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated
protein aggregates by autophagy. The Journal of Biological hemistry.
282(33): 24131-24145
Peterson, T. R., M. Laplante, C. C. Thoreen, Y. Sancak, S. A. Kang, W. M.
Kuehl, N. S. Gray, and D. M. Sabatini (2009) Deptor is an mTOR
inhibitor frequently overexpressed in multiple myeloma cells and
required for their survival. Cell. 137(5): 873-886
Rosner, M., and M. Hengstschlager (2008) Cytoplasmic and nuclear
distribution of the protein complexes mTORC1 and mTORC2:
rapamycin triggers dephosphorylation and delocalization of the
mTORC2 components rictor and sin1. Human Molecular Genetics.
17(19): 2934- 2948
Peng, H., Liu M, J. Pecka, K. W. Beisel, and S. J. Ding (2012) Proteomic
analysis of the organ of corti using nanoscale liquid chromatography
coupled with tandem mass spectrometry. International Journal of
Molecular Sciences 13(7): 8171- 8188
Pawar, H., M. K. Kashyap, N.A. Sahasrabuddhe, S. Renuse, H.C. Harsha, P.
Kumar, J. Sharma, K. Kandasamy, A. Marimuthu, B. Nair, S.
Rajagopalan, J. Maharudraiah, C.S. Premalatha, K. V. Kumar, M.
Vijayakumar, R. Chaerkady, T. S. Prasad, R. V. Kumar, R. V. Kumar,
and A. Pandey (2011) Quantitative tissue proteomics of esophageal
squamous cell carcinoma for novel biomarker discovery. Cancer
Biology and Therapy 12(6): 510-522
Rubinsztein, D.C., (2006) The roles of intracellular protein-degradation
pathways in neurodegeneration. Nature. 443(7113): 780-786
56
Robertson, M. D. and G. E. Wilcox (1986) Avian reovirus. Veterinary
Bulletin 56: 154-174
Spickett, C. M., A. Reis, and A. R. Pitt (2011) Identification of oxidized
phospholipids by electrospray ionization mass spectrometry and
LC-MS using a QQLIT instrument. Free Radical Biology and
Medicine 51(12): 2133-2149
Schneider, R. J., and T. Shenk (1987) Impact of virus infection on host cell
protein synthesis. Annual Review of Biochemistry. 56: 317-332
Spandidos, D. A., and A. F. Graham (1976) Physical and Chemical
Characterization of an Avian Reovirus. Journal of Virology. 19(3):
968-976
Sarbassov, D. D., S. M. Ali, and D. M. Sabatini (2005) Growing roles for the
mTOR pathway. Current Opinion in Cell Biology. 17(6): 596-603
Suzuki, K., T. Kirisako, Y. Kamada, N. Mizushima, T. Noda, and Y. Ohsumi
(2001) The pre-autophagosomal structure organized by concerted
functions of APG genes is essential for autophagosome formation. The
EMBO Journal. 20(59): 71–81.
Suzuki, K., Y. Kubota, T. Sekito, and Y. Ohsumi (2007) Hierarchy of Atg
proteins in pre-autophagosomal structure organization. Genes Cells.
12(2): 209-218
Suzuki, K., and Y. Ohsumi (2007) Molecular machinery of autophagosome
formation in yeast, Saccharomyces cerevisiae . FEBS Letters.
581(11): 2156-2161
Schmidt, A., M. Bickle, T. Beck, and M. N. Hall (1997) The yeast
phosphatidylinositol kinase homolog TOR2 activates RHO1 and
RHO2 via the exchange factor ROM2. Cell. 88(4): 531-542.
57
Schmelzle, T., T. Beck, D. E. Martin, and M. N. Hall (2004) Activation of the
RAS/cyclic AMP pathway suppresses a TOR deficiency in yeast.
M o l e c u l a r a n d C e l l u l a r B i o l o g y . 2 4 ( 1 ) : 3 3 8 - 3 5 1
S c h n i t z e r, T. J . , T. R a m o s , a n d V. G o u v e a ( 1 9 8 2 ) Av i a n
Reovirus Polypeptides: Analysis of Intracellular Virus-Specified
Products, Virions, Top Component, and Cores. Journal of Virology .
43(3): 1006-1014
Touris-Otero F., J. Martı́nez-Costasa, V. N. Vakhariab, J. Benavente
(2004b) Avian reovirus nonstructural protein microNS forms
viroplasm-like inclusions and recruits protein sigmaNS to these
structures. Virology 319: 94-106
Talloczy, Z., W. Jiang, H. W. Virgin, D. A. Leib, D. Scheuner, R. J. Kaufman,
E. L. Eskelinen, and B. Levine (2002) Regulation of starvation- and
virus-induced autophagy by the eIF2alpha kinase signaling pathway.
Proceedings of the National Academy of Sciences of the United States
of America. 99(1): 190-195
Touris-Otero, F., M. Cortez-San Martin, J. Martinez-Costas, and J. Benavente
(2004) Avian reovirus morphogenesis occurs within viral factories and
begins with the selective recruitment of sigmaNS and lambdaA to
microNS inclusions. Journal of Molecular Biology 341(2): 361-374
Tanaka, Y., S. Kume, M. Kitada, K. Kanasaki, T. Uzu, H. Maegawa, and D.
Koya (2012) Autophagy as a Therapeutic Target in Diabetic
Nephropathy. Journal of Diabetes Research, Article ID 628978,
12 pages
Thiede, B., A. Treumann, A. Kretschmer, J. Sohlke, and T. Rudel
(2005) Shotgun proteome analysis of protein cleavage in apoptotic
cells. Proteomics 5(8): 2123-2130
Von Bulow, V., and A. Klasen (1983) Effects of avian viruses on cultured
58
chicken bone-marrow derived macrophages. Avian Pathology
12(2): 179-198
Van Der Heide, L., (1997) Viral arthritis/tenosynovitis: a review. Avian
Pathology 6(4): 271-284
Walters, M. S., and H. L. Mobley (2009) Identification of uropathogenic
Escherichia coli surface proteins by shotgun proteomics. Journal of
Microbiological Methods 78(2): 131-135
Xiao, G. (2007) Autophagy and NF-kappaB: fight for fate. Cytokine and
Growth Factor Reviews. 18(3-4): 233-243.
Yu, L., A. Alva, H. Su, P. Dutt, E. Freundt, S. Welsh, E. H. Baehrecke, and M.
J. Lenardo (2004) Regulation of an ATG7-beclin 1 program of
autophagic cell death by caspase-8. Science. 304(5676): 1500-1502
Yang, C., V. Kaushal, S. V. Shah, and G. P. Kaushal (2008)
Autophagy is associated with apoptosis in cisplatin injury to
renal tubular epithelial cells. Renal Physiology: American
Journal of Physiology 294(4): F777-787
Yan, J. X., M. R. Wilkins, K. Ou, A. A. Gooley, K. L. Williams, J. C. Sanchez,
O. Golaz, C. Pasquali, and D. F. Hochstrasser (1995) Large-scale
amino-acid analysis for proteome studies. Journal of Chromatography
A 736(1-2): 291-302
Zhu, B. S., C. G. Xing, F. Lin, X. Q. Fan, K. Zhao, and Z. H. Qin (2011)
Blocking NF-κB nuclear translocation leads to p53-related autophagy
activation and cell apoptosis. World Journal of Gastroenterology
17(4): 478-487
Zheng, Y. T., S. Shahnazari, A. Brech, T. Lamark, T. Johansen, and J. H.
Brumell (2009) The Adaptor Protein p62/SQSTM1 Targets Invading
Bacteria to the Autophagy Pathway.The Journal of Immunology.
183(9): 909-916.
59
Zhu, B. S., C. G. Xing, F. Lin, X. Q. Fan, K. Zhao, and Z. H. Qin (2011)
Blocking NF-kB nuclear translocation leads to p53-related autophagy
activation and cell apoptosis. World Journal of Gastroenterology.
17(4): 478-487
|