跳到主要內容

臺灣博碩士論文加值系統

(18.97.14.87) 您好!臺灣時間:2024/12/09 06:42
字體大小: 字級放大   字級縮小   預設字形  
回查詢結果 :::

詳目顯示

: 
twitterline
研究生:連士涵
研究生(外文):Shih-Han Lain
論文名稱:肝癌衍生生長因子與化學合成肝素八醣的結構研究
論文名稱(外文):Structural characterization of synthetic heparin octasaccharide analogue associated with N-terminal domain of Hepatoma-derived growth factor
指導教授:錢嘉琳
指導教授(外文):Chia-Lin Chyan
學位類別:碩士
校院名稱:國立東華大學
系所名稱:化學系
學門:自然科學學門
學類:化學學類
論文種類:學術論文
論文出版年:2017
畢業學年度:105
論文頁數:86
中文關鍵詞:肝癌衍生生長因子肝素
外文關鍵詞:Hepatoma-derived growth factorHeparin
相關次數:
  • 被引用被引用:0
  • 點閱點閱:104
  • 評分評分:
  • 下載下載:3
  • 收藏至我的研究室書目清單書目收藏:0
肝素為目前廣泛被認知的具有多樣生理活性的碳水化合物,它能辨認各式各樣的相關蛋白質並介入其蛋白質-蛋白質間的作用,其中包含了趨化因子( Chemokines ) 以及生長因子 ( Growth factor ) 等。肝癌衍生生長因子被認為是肝癌發展的重要蛋白質,具有促進細胞增殖的功能,在細胞內可與細胞核中的DNA鍵結並作用,於細胞外作為趨化生長因子,並且與細胞膜上的醣類作用,因此,我們利用核磁共振儀器加以探討肝癌生長子因子與肝素類似物 ( 8 mer ) 作用之結構在蛋白質以及醣,以及其各別的結構變化,藉此提出蛋白質-醣作用的結構模型。
Heparan sulfate is a widely recognized carbohydrate with a variety of physiological activities that recognizes a wide variety of related proteins and intervenes in its protein-protein interactions, including chemokines and growth factors, etc. Hepatoma-derived growth factor is considered to be an important protein for the development of hepatocellular carcinoma. It has the function of promoting cell proliferation, which can bind to the DNA in the nucleus and act as a chemotactic growth factor and cell membrane , Therefore, we use nuclear magnetic resonance instruments to explore the role of hepatoma-derived growth factor and heparan sulfate analogue (8 mer) in the structure of proteins and sugars, as well as their respective structural changes, whereby the proposed structural model demonstrates .
目錄
一、 文獻探討
1.1 肝癌 1
1.2 肝癌衍生生長因子 1
1.3 糖胺聚醣 ( Glycosaminoglycan ) 3
1.4 蛋白質與醣的作用模型 5
1.5論文研究目的 6
二、 實驗材料與方法
2.1 蛋白質的表現 7
2.2 蛋白質純化 7
2.3 HDGF-N100之NMR光譜實驗與分析 8
2.4 HDGF-N100主鏈的化學位移循序判定 8
2.4.1 HNCA、HN(CO)CA 8
2.4.2 HNCO、HN(CA)CO 8
2.4.3 CBCANH、CBCA(CO)NH 9
2.5 HDGF-N100側鏈的化學位移判定 9
2.5.1 HCCH-COSY、HCCH-TOCSY 9
2.6 HS8 的 NMR 光譜實驗與分析 9
2.7 HS8化學位移判定 10
2.7.1 HS8 耦合常數與二面角判定 10
2.7.2 NOESY-HSQC的分子間化學位移判定,分子內( Intra )、分子間
( Inter )距離計算 10
2.8 鍵結的HDGF-N100的結構計算 11
2.9 鍵結的HS8的結構計算 12
2.10 HDGF-N100、HS8作用後的結構計算 12
三、 實驗結果與討論
3.1 蛋白質的純化與鑑定 13
3.2 HDGF-N100 主鏈之循序判定 13
3.2.1鍵結配體 ( Free form ) HDGF-N100化學位移 13
3.2.2 HDGF-N100與HS8鍵結 ( Bound form ) 後的化學位移判定 14
3.2.3 HDGF的自由/鍵結滴定實驗比例的校正 15
3.2.4化學位移偏差與解離常數 16
3.3 HDGF-N100之二級結構預測 17
3.4 HDGF-N100結構計算 17
3.5 HS8 自由/鍵結的化學位移判定 18
3.6 HS8耦合常數、距離分析 19
3.7 鍵結的HS8的結構計算 19
3.8 HDGF-HS8 的錯合物的模擬結構 20
3.9 結論 20
四、參考文獻 21
表目錄
圖目錄
1. Nakamura, H., Izumoto, Y., Kambe, H., Kuroda, T., Mori, T., Kawamura, K., Yamamoto, H., and Kishimoto, T. (1994) Molecular cloning of complementary DNA for a novel human hepatoma-derived growth factor. Its homology with high mobility group-1 protein. The Journal of biological chemistry 269, 25143-25149
2. Izumoto, Y., Kuroda, T., Harada, H., Kishimoto, T., and Nakamura, H. (1997) Hepatoma-derived growth factor belongs to a gene family in mice showing significant homology in the amino terminus. Biochemical and biophysical research communications 238, 26-32
3. Ikegame, K., Yamamoto, M., Kishima, Y., Enomoto, H., Yoshida, K., Suemura, M., Kishimoto, T., and Nakamura, H. (1999) A new member of a hepatoma-derived growth factor gene family can translocate to the nucleus. Biochemical and biophysical research communications 266, 81-87
4. Klagsbrun, M., Sasse, J., Sullivan, R., and Smith, J. A. (1986) Human tumor cells synthesize an endothelial cell growth factor that is structurally related to basic fibroblast growth factor. Proceedings of the National Academy of Sciences of the United States of America 83, 2448-2452
5. Uyama, H., Tomita, Y., Nakamura, H., Nakamori, S., Zhang, B., Hoshida, Y., Enomoto, H., Okuda, Y., Sakon, M., Aozasa, K., Kawase, I., Hayashi, N., and Monden, M. (2006) Hepatoma-derived growth factor is a novel prognostic factor for patients with pancreatic cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 12, 6043-6048
6. Hu, T. H., Lin, J. W., Chen, H. H., Liu, L. F., Chuah, S. K., and Tai, M. H. (2009) The expression and prognostic role of hepatoma-derived growth factor in colorectal stromal tumors. Diseases of the colon and rectum 52, 319-326
7. Iwasaki, T., Nakagawa, K., Nakamura, H., Takada, Y., Matsui, K., and Kawahara, K. (2005) Hepatoma-derived growth factor as a prognostic marker in completely resected non-small-cell lung cancer. Oncology reports 13, 1075-1080
8. Chen, S. C., Kung, M. L., Hu, T. H., Chen, H. Y., Wu, J. C., Kuo, H. M., Tsai, H. E., Lin, Y. W., Wen, Z. H., Liu, J. K., Yeh, M. H., and Tai, M. H. (2012) Hepatoma-derived growth factor regulates breast cancer cell invasion by modulating epithelial--mesenchymal transition. The Journal of pathology 228, 158-169
9. Dietz, F., Franken, S., Yoshida, K., Nakamura, H., Kappler, J., and Gieselmann, V. (2002) The family of hepatoma-derived growth factor proteins: characterization of a new member HRP-4 and classification of its subfamilies. The Biochemical journal 366, 491-500
10. Stec, I., Nagl, S. B., van Ommen, G. J., and den Dunnen, J. T. (2000) The PWWP domain: a potential protein-protein interaction domain in nuclear proteins influencing differentiation? FEBS letters 473, 1-5
11. Stec, I., Wright, T. J., van Ommen, G. J., de Boer, P. A., van Haeringen, A., Moorman, A. F., Altherr, M. R., and den Dunnen, J. T. (1998) WHSC1, a 90 kb SET domain-containing gene, expressed in early development and homologous to a Drosophila dysmorphy gene maps in the Wolf-Hirschhorn syndrome critical region and is fused to IgH in t(4;14) multiple myeloma. Human molecular genetics 7, 1071-1082
12. Hung, Y. L., Lee, H. J., Jiang, I., Lin, S. C., Lo, W. C., Lin, Y. J., and Sue, S. C. (2015) The First Residue of the PWWP Motif Modulates HATH Domain Binding, Stability, and Protein-Protein Interaction. Biochemistry 54, 4063-4074
13. Dwek, R. A. (1996) Glycobiology: Toward Understanding the Function of Sugars. Chemical reviews 96, 683-720
14. Rudd, P. M., and Dwek, R. A. (1997) Glycosylation: heterogeneity and the 3D structure of proteins. Critical reviews in biochemistry and molecular biology 32, 1-100
15. Rudiger, H., Siebert, H. C., Solis, D., Jimenez-Barbero, J., Romero, A., von der Lieth, C. W., Diaz-Marino, T., and Gabius, H. J. (2000) Medicinal chemistry based on the sugar code: fundamentals of lectinology and experimental strategies with lectins as targets. Current medicinal chemistry 7, 389-416
16. Lipkind, G. M., Shashkov, A. S., Knirel, Y. A., Vinogradov, E. V., and Kochetkov, N. K. (1988) A computer-assisted structural analysis of regular polysaccharides on the basis of 13C-n.m.r. data. Carbohydrate research 175, 59-75
17. Pomin, V. H. (2014) Biological findings from the recent NMR-based studies of glycosaminoglycan-protein interactions. Glycobiology 24, 991-1003
18. Nieto, L., Canales, A., Gimenez-Gallego, G., Nieto, P. M., and Jimenez-Barbero, J. (2011) Conformational selection of the AGA*IA(M) heparin pentasaccharide when bound to the fibroblast growth factor receptor. Chemistry (Weinheim an der Bergstrasse, Germany) 17, 11204-11209
19. Canales, A., Lozano, R., Lopez-Mendez, B., Angulo, J., Ojeda, R., Nieto, P. M., Martin-Lomas, M., Gimenez-Gallego, G., and Jimenez-Barbero, J. (2006) Solution NMR structure of a human FGF-1 monomer, activated by a hexasaccharide heparin-analogue. The FEBS journal 273, 4716-4727
20. Zulueta, M. M., Lin, S. Y., Lin, Y. T., Huang, C. J., Wang, C. C., Ku, C. C., Shi, Z., Chyan, C. L., Irene, D., Lim, L. H., Tsai, T. I., Hu, Y. P., Arco, S. D., Wong, C. H., and Hung, S. C. (2012) alpha-Glycosylation by D-glucosamine-derived donors: synthesis of heparosan and heparin analogues that interact with mycobacterial heparin-binding hemagglutinin. Journal of the American Chemical Society 134, 8988-8995
21. Huang, T. Y., Irene, D., Zulueta, M. M., Tai, T. J., Lain, S. H., Cheng, C. P., Tsai, P. X., Lin, S. Y., Chen, Z. G., Ku, C. C., Hsiao, C. D., Chyan, C. L., and Hung, S. C. (2017) Structure of the Complex between a Heparan Sulfate Octasaccharide and Mycobacterial Heparin-Binding Hemagglutinin. 56, 4192-4196
22. Hricovini, M., Driguez, P. A., and Malkina, O. L. (2014) NMR and DFT analysis of trisaccharide from heparin repeating sequence. The journal of physical chemistry. B 118, 11931-11942
23. Hricovini, M. (2015) Solution Structure of Heparin Pentasaccharide: NMR and DFT Analysis. The journal of physical chemistry. B 119, 12397-12409
連結至畢業學校之論文網頁點我開啟連結
註: 此連結為研究生畢業學校所提供,不一定有電子全文可供下載,若連結有誤,請點選上方之〝勘誤回報〞功能,我們會盡快修正,謝謝!
QRCODE
 
 
 
 
 
                                                                                                                                                                                                                                                                                                                                                                                                               
第一頁 上一頁 下一頁 最後一頁 top