Amadou, C., Pascal, G., Mangenot, S., Glew, M., Bontemps, C., Capela, D., Carrère, S., Cruveiller, S., Dossat, C., Lajus, A., Marchetti, M., Poinsot, V., Rouy, Z., Servin, B., Saad, M., Schenowitz, C., Barbe, V., Batut, J., Médigue, C. & Masson-Boivin, C. 2008. Genome sequence of the -rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia. Genome Res 18, 1472-1483.
Bennasar, A., Rosselló-Mora, R., Lalucat, J. & Moore, E. R. B. 1996. 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. Int J Syst Bacteriol 46, 200-205.
Chen, J., Gu, S., Hao, H. & Chen, J. 2016. Characteristics and metabolic pathway of Alcaligenes sp. TB for simultaneous heterotrophic nitrification-aerobic denitrification. Appl Microbiol Biotechnol 100, 9784-9794.
Chen, M. H., Sheu, S. Y., James, E. K., Young, C. C. & Chen, W. M. 2013. Azoarcus olearius sp. nov., a nitrogen-fixing bacterium isolated from oil-contaminated soil. Int J Syst Evol Microbiol 63, 3755-3761.
Chen, P., Li, J., Li, Q. X., Wang, Y., Li, S., Ren, T. & Wang, L. 2012. Simultaneous heterotrophic nitrification and aerobic denitrification by bacterium Rhodococcus sp. CPZ24. Bioresour Technol 116, 266-270.
Chen, W. M., Chen, J. C., Wang, C., Huang, C. W. & Sheu, S. Y. 2015. Vogesella amnigena sp. nov., isolated from a freshwater river. Int J Syst Evol Microbiol 65, 3634-3640.
Chen, W. M., Laevens, S., Lee, T. M., Coenye, T., De Vos, P., Mergeat, M. & Vandamme, P. 2001. Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient. Int J Syst Evol Microbiol 51, 1729-1735.
Chen, W. M., Li, Y. S., Young, C. C. & Sheu, S. Y. 2017. Paracoccus mangrovi sp. nov., isolated from a mangrove. Int J Syst Evol Microbiol in press.
Faoro, H., Menegazzo, R. R., Battistoni, F., Gyaneshwar, P., do Amaral, F. P., Taulé, C., Rausch, S., Galvão, P. G., de los Santos, C., Mitra, S., Heijo, G., Sheu, S. Y., Chen, W. M., Mareque, C., Tadra-Sfeir, M. Z., Baldani, J. I., Maluk, M., Guimarães, L. M., Stacey, A. P., de Souza, G., Pedrosa, E. M., Cruz, F. O. & James, E. K. 2017. The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T is genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Environ Microbiol Rep 9, 223-238.
Gauthier, M. J., Lafay, B., Christen, R., Fernandez, L., Acquaviva, M., Bonin, P. & Bertrand, J. C. 1992. Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon degrading marine bacterium. Int J Syst Bacteriol 42, 568-576.
Hagopian, D. S. & Riley, J. G. 1998. A closer look at the bacteriology of nitrification. Aquacult Eng 18, 223-244.
Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
He, T., Li, Z., Sun, Q., Xu, Y. & Ye, Q. 2016. Heterotrophic nitrification and aerobic denitrification by Pseudomonas tolaasii Y-11 without nitrite accumulation during nitrogen conversion. Bioresour Technol 200, 493-499.
Jin, R., Liu, T., Liu, G., Zhou, J., Huang, J. & Wang, A. 2015. Simultaneous heterotrophic nitrification and aerobic denitrification by the marine origin bacterium Pseudomonas sp. ADN-42. Appl Biochem Biotechnol 175, 2000-2011.
Kanehisa, M., Furumichi, M., Tanabe, M., Sato, Y. & Morishima, K. 2017. KEGG: new perspectives on genomes, pathways, diseases and drugs. Nucleic Acids Research 45, Database issue D353-D361.
Kumar, S., Stecher, G. & Tamura, K. 2016. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33, 1870-1874.
Kundu, P., Pramanik, A., Dasgupta, A., Mukherjee, S. & Mukherjee, J. 2014. Simultaneous Hheterotrophic nitrification and aerobic denitrification by Chryseobacterium sp. R31 isolated from abattoir wastewater. Biomed Res Int 2014, Article ID 436056, 1-12.
Medhi, K., Singhal, A., Chauhan, D. K. & Thakur, I. S. 2017. Investigating the nitrification and denitrification kinetics under aerobic and anaerobic conditions by Paracoccus denitrificans ISTOD1. Bioresour Technol in press.
Quail, M. A., Smith, M., Coupland, P., Otto, T. D., Harris, S. R., Connor, T. R., Bertoni, A., Swerdlow, H. P. & Gu, Y. 2012. A tale of three next generation sequencingplatforms: comparison of Ion Torrent, PacificBiosciences and Illumina MiSeq sequencers. BMC Genomics 13:341.
Saitou, N. & Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
Sanger, F., Nicklen, S. & Coulson, A. R. 1977. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74, 5463-5467.
Shan, H. W., Bao, W. Y., Ma, S., Wei, D. P. & Gao, L. 2016. Ammonia and nitrite nitrogen removal in shrimp culture by Vibrio alginolyticus VZ5 immobilized in SA beads. Aquacult Int 24, 357-372.
Sheu, S. Y., Chen, Z. H., Young, C. C. & Chen, W. M. 2016a. Rhizobium ipomoeae sp. nov., isolated from a water convolvulus field. Int J Syst Evol Microbiol 66, 1633-1640.
Sheu, S. Y., Li, Y. S. & Chen, W. M. 2016b. Piscinibacterium candidicorallinum gen. nov., sp. nov., a member of the order Burkholderiales isolated from a fish pond. Int J Syst Evol Microbiol 66, 5260-5267.
Sheu, S. Y., Shiau, Y. W., Wei, Y. T. & Chen, W. M. 2013. Gemmobacter lanyuensis sp. nov., isolated from a freshwater spring. Int J Syst Evol Microbiol 63, 4039-4045.
Sun, Z., Lv, Y., Liu, Y. & Ren, R. 2016. Removal of nitrogen by heterotrophic nitrification-aerobic denitrification of a novel metal resistant bacterium Cupriavidus sp. S1. Bioresour Technol 220, 142-150.
Tchobanoglous, G., Burton, F. L. & Stensel, H. D. 2003. Wastewater engineering: treatment and reuse. Boston, McGraw-Hill.
Wang, J., Gong, B., Wang, Y., When, Y., Zhou, J. & He, Q. 2017. The potential multiple mechanisms and microbial communities in simultaneous nitrification and denitrification process treating high carbon and nitrogen concentration saline wastewater. Bioresour Technol 243, 708-715.
Yoon, S. H., Ha, S. M., Kwon, S., Lim, J., Kim, Y., Seo, H. & Chun, J. 2017. Introducing EzBioCloud: a taxonomically united database of 16S rRNA and whole genome assemblies. Int J Syst Evol Microbiol 67, 1613-1617.
Zhang, X., Liang, Y., Ma, Y., Du, J., Pang, L. & Zhang, H. 2016. Ammonia removal and microbial characteristics of partial nitrification in biofilm and activated sludge treating low strength sewage at low temperature. Ecolog Eng 93, 104-111.
行政院農業委員會漁業署,2011、2012、2013、2014、2015。中華民國台閩地區漁業統計年報,行政院農業委員會漁業署。
石小彤,2013。兩株耐鹽好氧反硝化菌分離鑑定及在水體淨化中的出不應用,中國河北大學理學碩士論文。
李懿書,2016。台灣本土魚塭及冷泉的新屬新種細菌之分類鑑定,國立高雄海洋科技大學水產食品科學系暨研究所碩士論文。邱燕欣、林詩舜,2014。淺談次世代定序技術 (Next Generation Sequencing, NGS)發展與其應用,種苗科技專訊 88,13。陳玉珊,2015。從龜山島海底熱泉分離出一株高溫菌NTOU1之基因序列分析草稿,國立臺灣海洋大學海洋生物研究所碩士論文。陳中庸、蔡世峰,2003。基因體定序之現況與展望,國立陽明大學遺傳學研究所
黃志彬、楊磊、袁如馨,2014。臺灣南部地區水產養殖業水資源永續發展對策,國立交通大學環境工程研究所。
黃澄文,2017。分離自淡水環境的新種細菌之分類學研究,國立高雄海洋科技大學海洋生物技術系暨研究所碩士論文。劉麗萍,2016。分離自台灣淡水與海水的新屬新種菌株之鑑定與特性分析,國立高雄海洋科技大學水產食品科學系暨研究所碩士論文。歐詩儀、洪敏娟、洪蕙如、伍雅馨,2008。亞硝酸鹽對水質的影響。
蔡若琳,2009。氨氧化細菌的特性及新式生物脫氮技術之探討,國立中山大學生物科學系在職專班碩士論文。宋明飛、胡艷玲,2013。硝化反硝化菌對富營養化水體修復的研究現狀分析,中國吉林農業大學資源與環境學院、中國遼寧師範大學城市與環境學院。
氮循環 http://quiz.kut.com.tw/review/senior1-2-biology-101-third.aspx