|
Aitken, C. E., R. A. Marshall and J. D. Puglisi (2008). "An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments." Biophys J 94(5): 1826-1835. Arlie J. Rinaldi, w., Paul E. Lund, Mario R. Blanco,w & Nils G. Walter (2016). "The Shine-Dalgarno sequence of riboswitch-regulated single mRNAs shows ligand-dependent accessibility bursts." Ban, N., P. Nissen, J. Hansen, P. B. Moore and T. A. Steitz (2000). "The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution." Science 289(5481): 905-920. Bartlett, J. M. and D. Stirling (2003). "A short history of the polymerase chain reaction." Methods Mol Biol 226: 3-6. Berk, V., W. Zhang, R. D. Pai and J. H. Cate (2006). "Structural basis for mRNA and tRNA positioning on the ribosome." Proc Natl Acad Sci U S A 103(43): 15830-15834. Carter, A. P., W. M. Clemons, D. E. Brodersen, R. J. Morgan-Warren, B. T. Wimberly and V. Ramakrishnan (2000). "Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics." Nature 407(6802): 340-348. Carter, A. P., W. M. Clemons, Jr., D. E. Brodersen, R. J. Morgan-Warren, T. Hartsch, B. T. Wimberly and V. Ramakrishnan (2001). "Crystal structure of an initiation factor bound to the 30S ribosomal subunit." Science 291(5503): 498-501. Chang, Y.-C. (2016). Engineering Fluorescently Labeled Ribosome for Observing mRNA-Ribosome Interactions at Single-Molecule Level. Master National Taiwan University. Dahlberg, A. E. (1989). "The functional role of ribosomal RNA in protein synthesis." Cell 57(4): 525-529. Dahlquist, K. D. and J. D. Puglisi (2000). "Interaction of translation initiation factor IF1 with the E. coli ribosomal A site." J Mol Biol 299(1): 1-15. Dorywalska, M., S. C. Blanchard, R. L. Gonzalez, H. D. Kim, S. Chu and J. D. Puglisi (2005). "Site-specific labeling of the ribosome for single-molecule spectroscopy." Nucleic Acids Res 33(1): 182-189. Forster, T. (1948). "Zwischenmolekulare energiewanderung und fluoreszenz." Annalen Der Physik 2(1-2): 55-75. Ha, T. (2001). "Single-molecule fluorescence resonance energy transfer." Methods 25(1): 78-86. Johnson, G., W. Widner, W. N. Xin and M. Feiss (1991). "Interference with phage lambda development by the small subunit of the phage 21 terminase, gp1." J Bacteriol 173(9): 2733-2738. Kapanidis, A. N. and T. Strick (2009). "Biology, one molecule at a time." Trends Biochem Sci 34(5): 234-243. Keller, E. B., P. C. Zamecnik and R. B. Loftfield (1954). "The role of microsomes in the incorporation of amino acids into proteins." Journal of Histochemistry & Cytochemistry 2(5): 378-386. Kennell, D. and H. Riezman (1977). "Transcription and translation initiation frequencies of the Escherichia coli lac operon." J Mol Biol 114(1): 1-21. Kisselev, L. L. and R. H. Buckingham (2000). "Translational termination comes of age." Trends Biochem Sci 25(11): 561-566. Kitahara, K. and K. Miyazaki (2011). "Specific inhibition of bacterial RNase T2 by helix 41 of 16S ribosomal RNA." Nat Commun 2: 549. La Teana, A., C. O. Gualerzi and R. Brimacombe (1995). "From stand-by to decoding site. Adjustment of the mRNA on the 30S ribosomal subunit under the influence of the initiation factors." RNA 1(8): 772-782. Laursen, B. S., H. P. Sorensen, K. K. Mortensen and H. U. Sperling-Petersen (2005). "Initiation of protein synthesis in bacteria." Microbiol Mol Biol Rev 69(1): 101-123. Lee, H. W., J. Y. Ryu, J. Yoo, B. Choi, K. Kim and T. Y. Yoon (2013). "Real-time single-molecule coimmunoprecipitation of weak protein-protein interactions." Nat Protoc 8(10): 2045-2060. Li, G. W., E. Oh and J. S. Weissman (2012). "The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria." Nature 484(7395): 538-541. Liljas, A. and S. al-Karadaghi (1997). "Structural aspects of protein synthesis." Nat Struct Biol 4(10): 767-771. Luthe, D. S. (1983). "A Simple Technique for the Preparation and Storage of Sucrose Gradients." Analytical Biochemistry 135(1): 230-232. Malys, N. (2012). "Shine-Dalgarno sequence of bacteriophage T4: GAGG prevails in early genes." Mol Biol Rep 39(1): 33-39. Michalet, X., S. Weiss and M. Jager (2006). "Single-molecule fluorescence studies of protein folding and conformational dynamics." Chemical Reviews 106(5): 1785-1813. Moazed, D. and H. F. Noller (1989). "Intermediate states in the movement of transfer RNA in the ribosome." Nature 342(6246): 142-148. Nissen, P., J. Hansen, N. Ban, P. B. Moore and T. A. Steitz (2000). "The structural basis of ribosome activity in peptide bond synthesis." Science 289(5481): 920-930. Palade, G. E. (1955). "A small particulate component of the cytoplasm." J Biophys Biochem Cytol 1(1): 59-68. Petrelli, D., A. LaTeana, C. Garofalo, R. Spurio, C. L. Pon and C. O. Gualerzi (2001). "Translation initiation factor IF3: two domains, five functions, one mechanism?" EMBO J 20(16): 4560-4569. Ramakrishnan, V. (2002). "Ribosome structure and the mechanism of translation." Cell 108(4): 557-572. Rodnina, M. V., A. Savelsbergh, V. I. Katunin and W. Wintermeyer (1997). "Hydrolysis of GTP by elongation factor G drives tRNA movement on the ribosome." Nature 385(6611): 37-41. Rosenberger, R. F. and G. Foskett (1981). "An estimate of the frequency of in vivo transcriptional errors at a nonsense codon in Escherichia coli." Mol Gen Genet 183(3): 561-563. Roy, R., S. Hohng and T. Ha (2008). "A practical guide to single-molecule FRET." Nat Methods 5(6): 507-516. Schluenzen, F., A. Tocilj, R. Zarivach, J. Harms, M. Gluehmann, D. Janell, A. Bashan, H. Bartels, I. Agmon, F. Franceschi and A. Yonath (2000). "Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution." Cell 102(5): 615-623. Schmeing, T. M., K. S. Huang, D. E. Kitchen, S. A. Strobel and T. A. Steitz (2005). "Structural insights into the roles of water and the 2'' hydroxyl of the P site tRNA in the peptidyl transferase reaction." Mol Cell 20(3): 437-448. Schmeing, T. M., K. S. Huang, S. A. Strobel and T. A. Steitz (2005). "An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA." Nature 438(7067): 520-524. Sekar, R. B. and A. Periasamy (2003). "Fluorescence resonance energy transfer (FRET) microscopy imaging of live cell protein localizations." J Cell Biol 160(5): 629-633. Shine, J. and L. Dalgarno (1975). "Determinant of cistron specificity in bacterial ribosomes." Nature 254(5495): 34-38. Shine, J., L. Dalgarno and J. A. Hunt (1974). "Fingerprinting of eukaryotic ribosomal RNA labelled with tritiated nucleosides." Anal Biochem 59(2): 360-365. Stryer, L. and R. P. Haugland (1967). "Energy Transfer - a Spectroscopic Ruler." Proceedings of the National Academy of Sciences of the United States of America 58(2): 719-&. Takyar, S., R. P. Hickerson and H. F. Noller (2005). "mRNA helicase activity of the ribosome." Cell 120(1): 49-58. Tzareva, N. V., V. I. Makhno and I. V. Boni (1994). "Ribosome-messenger recognition in the absence of the Shine-Dalgarno interactions." FEBS Lett 337(2): 189-194. Valle, M., A. Zavialov, J. Sengupta, U. Rawat, M. Ehrenberg and J. Frank (2003). "Locking and unlocking of ribosomal motions." Cell 114(1): 123-134. Walter, N. G., C. Y. Huang, A. J. Manzo and M. A. Sobhy (2008). "Do-it-yourself guide: how to use the modern single-molecule toolkit." Nat Methods 5(6): 475-489. Wang, L., A. Pulk, M. R. Wasserman, M. B. Feldman, R. B. Altman, J. H. Cate and S. C. Blanchard (2012). "Allosteric control of the ribosome by small-molecule antibiotics." Nat Struct Mol Biol 19(9): 957-963. Weinger, J. S., K. M. Parnell, S. Dorner, R. Green and S. A. Strobel (2004). "Substrate-assisted catalysis of peptide bond formation by the ribosome." Nat Struct Mol Biol 11(11): 1101-1106. Wimberly, B. T., D. E. Brodersen, W. M. Clemons, Jr., R. J. Morgan-Warren, A. P. Carter, C. Vonrhein, T. Hartsch and V. Ramakrishnan (2000). "Structure of the 30S ribosomal subunit." Nature 407(6802): 327-339. Yin, J., P. D. Straight, S. M. McLoughlin, Z. Zhou, A. J. Lin, D. E. Golan, N. L. Kelleher, R. Kolter and C. T. Walsh (2005). "Genetically encoded short peptide tag for versatile protein labeling by Sfp phosphopantetheinyl transferase." Proc Natl Acad Sci U S A 102(44): 15815-15820. Yusupova, G. Z., M. M. Yusupov, J. H. D. Cate and H. F. Noller (2001). "The path of messenger RNA through the ribosome." Cell 106(2): 233-241. Zhang, A., L. Sun, J. Buswell, N. Considine, I. Ghosh, A. Masharina, C. Noren and M. Q. Xu (2011). "Fluorescent site-specific labeling of Escherichia coli expressed proteins with Sfp phosphopantetheinyl transferase." Methods Mol Biol 705: 295-307.
|