|
[1]J. F. Greenleaf, M. Fatemi, and M. Insana, "Selected methods for imaging elastic properties of biological tissues," Annu. Rev. Biomed. Eng., vol. 5, pp. 57-78, 2003. [2]J. Ophir, S. K. Alam, B. S. Garra, F. Kallel, E. E. Konofagou, T. Krouskop, et al., "Elastography: Imaging the elastic properties of soft tissues with ultrasound," J. Med. Ultrasonics, vol. 29, pp. 155–171, 2002. [3]K. Nightingale, R. Bentley, and G. Trahey, "Observations of Tissue Response to Acoustic Radiation Force: Opportunities for Imaging," Ultrason. Imaging, vol. 24, pp. 129–138, 2002. [4]A. P. Sarvazyan, O. V. Rudenko, S. D. Swanson, J. B. Fowlkes, and S. Y. Emelianov, "Shear wave elasticity imaging: a new ultrasonic technology of medical diagnostics," Ultrasound Med. Biol., vol. 24, pp. 1419–1435, 1998. [5]K. Nightingale, S. McAleavey, and G. Trahey, "Shear-wave generation using acoustic radiation force: in vivo and ex vivo results," Ultrasound Med. Biol., vol. 29, pp. 1715–1723, 2003. [6]L. Sandrin, M. Tanter, S. Catheline, and M. Fink, "Shear modulus imaging with 2-D transient elastography," IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol. 49, pp. 426–435, 2002. [7]J.-L. Gennisson, T. Deffieux, M. Fink, and M. Tanter, "Ultrasound elastography: principles and techniques," Diagn. Interv. Imaging, vol. 94, pp. 487-495, 2013. [8]M. M. Doyley and K. J. Parker, "Elastography: General Principles and Clinical Applications," Ultrasound Clin., vol. 9, pp. 1-11, 2014. [9]J. Bercoff, M. Tanter, and M. Fink, "Supersonic shear imaging: a new technique for soft tissue elasticity mapping," IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol. 51, pp. 396-409, 2004. [10]T. Deffieux, J.-L. Gennisson, B. Larrat, M. Fink, and M. Tanter, "The variance of quantitative estimates in shear wave imaging: theory and experiments," IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol. 59, pp. 2390–2410, 2012. [11]H. Zhao, P. Song, M. W. Urban, J. F. Greenleaf, and S. Chen, "Robust shear wave speed measurement using comb-push ultrasound radiation force," in IEEE International Ultrasonics Symposium, Florida, USA, 2011, pp. 1270-1273. [12]J. M. Schmitt, "OCT elastography: imaging microscopic deformation and strain of tissue," Opt. Express, vol. 3, pp. 199-211, 1998. [13]M. Razani, T. W. H. Luk, A. Mariampillai, P. Siegler, T.-R. Kiehl, M. C. Kolios, et al., "Optical coherence tomography detection of shear wave propagation in inhomogeneous tissue equivalent phantoms and ex-vivo carotid artery samples," Biomed. Opt. Express, vol. 5, pp. 895–906, 2014. [14]S. Wang and K. V. Larin, "Shear wave imaging optical coherence tomography (SWI-OCT) for ocular tissue biomechanics," Opt. Lett., vol. 39, pp. 41-44, 2014. [15]K. V. Larin and D. D. Sampson, "Optical coherence elastography - OCT at work in tissue biomechanics [Invited]," Biomed. Opt. Express, vol. 8, pp. 1172-1202, 2017. [16]A. Nahas, M. Tanter, T.-M. Nguyen, J.-M. Chassot, M. Fink, and A. C. Boccara, "From supersonic shear wave imaging to full-field optical coherence shear wave elastography," J. Biomed. Opt., vol. 18, p. 121514, 2013. [17]T.-M. Nguyen, S. Song, B. Arnal, Z. Huang, M. O’Donnell, and R. K. Wang, "Visualizing ultrasonically-induced shear wave propagation using phase-sensitive optical coherence tomography for dynamic elastography," Opt. Lett., vol. 39, pp. 838-841, 2014. [18]E. Bossy, A. R. Funke, K. Daoudi, and A.-C. Boccara, "Transient optoelastography in optically diffusive media," Appl. Phys. Lett., vol. 90, p. 174111, 2007. [19]D. A. Boas and A. K. Dunn, "Laser speckle contrast imaging in biomedical optics," J. Biomed. Opt., vol. 15, p. 011109, 2010. [20]Y. Cheng, R. Li, S. Li, C. Dunsby, R. J. Eckersley, D. S. Elson, et al., "Shear wave elasticity imaging based on acoustic radiation force and optical detection," Ultrasound Med. Biol., vol. 38, pp. 1637–1645, 2012. [21]R. Edmondson, J. J. Broglie, A. F. Adcock, and L. Yang, "Three-dimensional cell culture systems and their applications in drug discovery and cell-based biosensors," Assay Drug Dev. Technol., vol. 12, pp. 207–218, 2014. [22]D. Antoni, H. Burckel, E. Josset, and G. Noel, "Three-dimensional cell culture: a breakthrough in vivo," Int. J. Mol. Sci., vol. 16, pp. 5517–5527, 2015. [23]F. Pampaloni, E. G. Reynaud, and E. H. K. Stelzer, "The third dimension bridges the gap between cell culture and live tissue," Nat. Rev. Mol. Cell Biol., vol. 8, pp. 839–845, 2007. [24]M. Ravi, V. Paramesh, S. R. Kaviya, E. Anuradha, and F. D. P. Solomon, "3D cell culture systems: advantages and applications," J. Cell Physiol., vol. 230, pp. 16-26, 2015. [25]B. N. Mason, J. P. Califano, and C. A. Reinhart-King, "Matrix stiffness: A regulator of cellular behavior and tissue formation," in Engineering Biomaterials for Regenerative Medicine, S. K. Bhatia, Ed., ed New York: Springer, 2012, pp. 19-37. [26]J. P. Winer, A. Chopra, J. Y. Kresh, and P. A. Janmey, "Substrate elasticity as a probe to measure mechanosensing at cell-cell and cell-matrix Junctions," in Mechanobiology of Cell-Cell and Cell-Matrix Interactions, A. W. Johnson and B. A. C. Harley, Eds., ed Boston: Springer, 2011. [27]T. R. Cox and J. T. Erler, "Remodeling and homeostasis of the extracellular matrix: implications for fibrotic diseases and cancer," Dis. Model Mech., vol. 4, pp. 165–178, 2011. [28]P. Lu, V. M. Weaver, and Z. Werb, "The extracellular matrix: A dynamic niche in cancer progression," J. Cell Biol., vol. 196, pp. 395–406, 2012. [29]D. T. Butcher, T. Alliston, and V. M. Weaver, "A tense situation: forcing tumour progression," Nat. Rev. Cancer, vol. 9, pp. 108–122, 2009. [30]A. M. Handorf, Y. Zhou, M. A. Halanski, and W.-J. Li, "Tissue stiffness dictates development, homeostasis, and disease progression," Organogenesis, vol. 11, pp. 1–15, 2015. [31]J. L. Vanderhooft, M. Alcoutlabi, J. J. Magda, and G. D. Prestwich, "Rheological properties of cross-linked hyaluronan-gelatin hydrogels for tissue engineering," Macromol. Biosci., vol. 9, pp. 20–28, 2009. [32]O. Chaudhuri, L. Gu, D. Klumpers, M. Darnell, S. A. Bencherif, J. C. Weaver, et al., "Hydrogels with tunable stress relaxation regulate stem cell fate and activity," Nat. Mater., vol. 15, pp. 326–334, 2016. [33]D. Wirtz, "Particle-tracking microrheology of living cells: principles and applications," Annu. Rev. Biophys., vol. 38, pp. 301–326, 2009. [34]Y. Tseng, T. P. Kole, and D. Wirtz, "Micromechanical mapping of live cells by multiple-particle-tracking microrheology," Biophys. J., vol. 83, pp. 3162–3176, 2002. [35]G. Thomas, N. A. Burnham, T. A. Camesano, and Q. Wen, "Measuring the mechanical properties of living cells using atomic force microscopy," J. Vis. Exp., vol. 76, p. 50497, 2013. [36]S. S. Soofi, J. A. Last, S. J. Liliensiek, P. F. Nealey, and C. J. Murphy, "The elastic modulus of Matrigel as determined by atomic force microscopy," J. Struct. Biol., vol. 167, pp. 216–219, 2009. [37]N. Gavara and R. S. Chadwick, "Relationship between cell stiffness and stress fiber amount, assessed by simultaneous atomic force microscopy and live-cell fluorescence imaging," Biomech. Model Mechanobiol., vol. 15, pp. 511–523, 2016. [38]P.-L. Kuo, C.-C. Charng, P.-C. Wu, and P.-C. Li, "Shear-Wave Elasticity Measurement of Three-Dimensional Cell Cultures for Mechanobiology," J. Cell Sci., vol. 130, pp. 292–302, 2016. [39]M. H. Zaman, L. M. Trapani, A. L. Sieminski, D. MacKellar, H. Gong, R. D. Kamm, et al., "Migration of tumor cells in 3D matrices is governed by matrix stiffness along with cell-matrix adhesion and proteolysis," Proc. Natl Acad. Sci. U. S. A., vol. 103, pp. 10889–10894, 2006. [40]L. V. Wang, "Ultrasound-mediated biophotonic imaging: a review of acousto-optical tomography and photo-acoustic tomography," Dis. Markers, vol. 19, pp. 123-138, 2004. [41]S. J. Kirkpatrick, D. D. Duncan, and E. M. Wells-Gray, "Detrimental effects of speckle-pixel size matching in laser speckle contrast imaging," Opt. Lett., vol. 33, pp. 2886-2888, 2008. [42]T. Moffitt, Y.-C. Chen, and S. A. Prahl, "Preparation and characterization of polyurethane optical phantoms," J. Biomed. Opt., vol. 11, p. 041103, 2006. [43]K. Daoudi, A.-C. Boccara, and E. Bossy, "Detection and discrimination of optical absorption and shear stiffness at depth in tissue-mimicking phantoms by transient optoelastography," Appl. Phys. Lett., vol. 94, p. 154103, 2009. [44]T. Moroishi, C. G. Hansen, and K.-L. Guan, "The emerging roles of YAP and TAZ in cancer," Nat. Rev. Cancer, vol. 15, pp. 73–79, 2015. [45]T. Panciera, L. Azzolin, M. Cordenonsi, and S. Piccolo, "Mechanobiology of YAP and TAZ in physiology and disease," Nat. Rev. Mol. Cell Biol., vol. 18, pp. 758–770, 2017. [46]S. E. Reid, E. J. Kay, L. J. Neilson, A. T. Henze, J. Serneels, E. J. McGhee, et al., "Tumor matrix stiffness promotes metastatic cancer cell interaction with the endothelium," EMBO J., vol. 36, pp. 2373–2389, 2017. [47]W. J. Polacheck, I. K. Zervantonakis, and R. D. Kamm, "Tumor cell migration in complex microenvironments," Cell Mol. Life Sci., vol. 70, pp. 1335–1356, 2013. [48]A. G. Clark and D. M. Vignjevic, "Modes of cancer cell invasion and the role of the microenvironment," Curr. Opin. Cell Biol., vol. 36, pp. 13–22, 2015. [49]K. M. Riching, B. L. Cox, M. R. Salick, C. Pehlke, A. S. Riching, S. M. Ponik, et al., "3D collagen alignment limits protrusions to enhance breast cancer cell persistence," Biophys. J., vol. 107, pp. 2546–2558, 2014. [50]J. Soza-Ried and A. G. Fisher, "Reprogramming somatic cells towards pluripotency by cellular fusion," Curr. Opin. Genet. Dev., vol. 22, pp. 459–465, 2012. [51]F. K. Noubissi and B. M. Ogle, "Cancer Cell Fusion: Mechanisms Slowly Unravel," Int. J. Mol. Sci., vol. 17, p. 1587, 2016. [52]M. Álvarez-Dolado and M. Martínez-Losa, "Cell fusion and tissue regeneration," Adv. Exp. Med. Biol., vol. 713, pp. 161–175, 2017. [53]W. Han, S. Chen, W. Yuan, Q. Fan, J. Tian, X. Wang, et al., "Oriented collagen fibers direct tumor cell intravasation," Proc. Natl Acad. Sci. U. S. A., vol. 113, pp. 11208–11213, 2016. [54]M. Bernal, J.-L. Gennisson, P. Flaud, and M. Tanter, "Correlation between classical rheometry and supersonic shear wave imaging in blood clots," Ultrasound Med. Biol., vol. 39, pp. 2123–2136, 2013. [55]Y. Cheng, S. Li, R. J. Eckersley, D. S. Elson, and M.-X. Tang, "Viscosity measurement based on shear-wave laser speckle contrast analysis," J. Biomed. Opt., vol. 18, p. 121511, 2013. [56]P. Friedl and K. Wolf, "Plasticity of cell migration: a multiscale tuning model," J. Cell Biol., vol. 188, pp. 11–19, 2010. [57]J.-l. Gennisson, J. Provost, and T. Deffieux, "4-D ultrafast shear-wave imaging," IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol. 62, pp. 1059–1065, 2015. [58]J. Tian, Q. Liu, X. Wang, P. Xing, Z. Yang, and C. Wu, "Application of 3D and 2D quantitative shear wave elastography (SWE) to differentiate between benign and malignant breast masses," Sci. Rep., vol. 7, p. 41216, 2017. [59]A. Ingle and T. Varghese, "Three Dimensional Shear Wave Elastographic Reconstruction of Ablations," in IEEE Eng. Med. Biol. Soc., Chicago, USA, 2014, pp. 2857–2860. [60]M. Wang, B. Byram, and M. Palmeri, "Imaging transverse isotropic properties of muscle by monitoring acoustic radiation force induced shear waves using a 2-D matrix ultrasound array," IEEE Trans. Med. Imaging, vol. 32, pp. 1671-1684, 2013. [61]H. Latorre-Ossa, "In vivo monitoring of elastic changes during cancer development and therapeutic treatment," Ph.D., Paris VII University Denis Diderot, Paris, France, 2012. [62]J. Zhu, L. Qi, Y. Miao, T. Ma, C. Dai, Y. Qu, et al., "3D mapping of elastic modulus using shear wave optical micro-elastography," Sci Rep., vol. 6, p. 35499, 2016. [63]J. Sharpe, U. Ahlgren, P. Perry, B. Hill, A. Ross, J. Hecksher-Sørensen, et al., "Optical projection tomography as a tool for 3D microscopy and gene expression studies," Science, vol. 296, pp. 541-545, 2002. [64]A. Bassi, L. Fieramonti, C. D’Andrea, M. Mione, and G. Valentini, "In vivo label-free three-dimensional imaging of zebrafish vasculature with optical projection tomography," J. Biomed. Opt., vol. 16, p. 100502, 2011. [65]G. Feng, J. Chen, X. Lu, D. Han, and Y. Zeng, "Laser speckle projection tomography," Opt Lett., vol. 38, pp. 2654-2656, 2013. [66]A. C. Kak and M. Slaney, Principles of Computerized Tomographic Imaging: IEEE Press, 1998. [67]L. W. Goldman, "Principles of CT and CT technology," J. Nucl. Med. Technol., vol. 35, pp. 115-128, 2007. [68]A. B. Parthasarathy, W. J. Tom, A. Gopal, X. Zhang, and A. K. Dunn, "Robust flow measurement with multi-exposure speckle imaging," Opt. Express, vol. 16, pp. 1975–1989, 2008. [69]J. C. Ramirez-San-Juan, C. Regan, B. Coyotl-Ocelotl, and B. Choi, "Spatial versus temporal laser speckle contrast analyses in the presence of static optical scatterers," J. Biomed. Opt., vol. 19, p. 106009, 2014. [70]P. G. Vaz, A. Humeau-Heurtier, E. Figueiras, C. Correia, and J. Cardoso, "Effect of static scatterers in laser speckle contrast imaging: an experimental study on correlation and contrast," Phys. Med. Biol., vol. 63, p. 015024, 2017. [71]Y.-S. Yang, "Shear Wave Computed Tomography," Master, Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, Taiwan, 2018. [72]M. J. Willemink, P. A. d. Jong, T. Leiner, L. M. d. Heer, R. A. J. Nievelstein, R. P. J. Budde, et al., "Iterative reconstruction techniques for computed tomography Part 1: technical principles," Eur. Radiol., vol. 23, pp. 1623-1631, 2013. [73]L. L. Geyer, U. J. Schoepf, F. G. Meinel, J. John W. Nance, G. Bastarrika, J. A. Leipsic, et al., "State of the Art: Iterative CT Reconstruction Techniques," Radiology, vol. 276, pp. 339-357, 2015. [74]M. Soleimani and T. Pengpen, "Introduction: a brief overview of iterative algorithms in X-ray computed tomography," Philos. Trans. A Math. Phys. Eng. Sci., vol. 373, p. 20140399, 2015. [75]M. Beister, D. Kolditz, and W. A. Kalender, "Iterative reconstruction methods in X-ray CT," Phys. Med., vol. 28, pp. 94-108, 2012. [76]J. Hsieh, B. Nett, Z. Yu, K. Sauer, J.-B. Thibault, and C. A. Bouman, "Recent advances in CT image reconstruction," Curr. Radiol. Rep., vol. 1, pp. 39-51, 2013. [77]Z. Zhu, K. Wahid, P. Babyn, D. Cooper, I. Pratt, and Y. Carter, "Improved Compressed Sensing-Based Algorithm for Sparse-View CT Image Reconstruction," Comput. Math. Methods Med., vol. 2013, p. 185750, 2013. [78]E. Candes and J. Romberg. (2005). l1-magic : Recovery of Sparse Signals via Convex Programming. Available: https://statweb.stanford.edu/~candes/l1magic/ [79]F. Krahmer, C. Kruschel, and M. Sandbichler, "Total Variation Minimization in Compressed Sensing," in Compressed Sensing and its Applications, H. Boche, G. Caire, R. Calderbank, M. März, G. Kutyniok, and R. Mathar, Eds., ed: Birkhäuser, Cham, 2017.
|